Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108562917

Identifier: 108562917

GI number: 108562917

Start: 510775

End: 511767

Strand: Direct

Name: 108562917

Synonym: HPAG1_0492

Alternate gene names: NA

Gene position: 510775-511767 (Clockwise)

Preceding gene: 108562916

Following gene: 108562919

Centisome position: 32.0

GC content: 38.27

Gene sequence:

>993_bases
TTGAAAAAGGTATTACCGGCTTTATTAATGGGGTTTGTGGGCTTGAATGCTGATGAGCGTTTGTTGGAAATCATGCACCT
TTATCAAAAACAAGGCTTGGAAGTGGTGGGTCAAAAGCTGGATTCTTATTTAGCGGATAAAGCTTTTTGGGCAGAAGAGC
TTCAAAATAAGGACACGGATTTTGGCTATTATCAAAACAAGCAGTTTTTATTTGTAGCGGATAAATCCAAGCCCAGTTTG
GAGTTTTATGAGATAGAAAATAACATGCTTAAAAAAATCAACAGCTCTAAAGCTCTTGTAGGCTCTAAAAAGGGCGATAA
AACTTTAGAGGGCGATTTGGCCACGCCTATTGGAGTGTATCGTATCACGCAGAAATTAGAGCGCTTGGATCAATATTATG
GCGTTTTGGCTTTTGTAACGAATTACCCTAATTTGTATGACACTTTGAAAAAGCGTACTGGGCATGGCATTTGGGTGCAT
GGAATGCCTTTAAATGGCGATAGGAATGAATTGAACACCAAGGGCTGTATTGCGATTGAAAACCCTATTTTAAGCTCTTA
TGACAAAGTGTTAAAAGGCGAAAAAGCGTTCCTCATCACCTATGAAGGCAAGTTTTTCCCCAGCACTAAAGAAGAATTGA
GCATGATTTTAAGCTCCCTTTTCCAATGGAAAGAAGCTTGGGCTAGAGGCGATTTTGAACGCTACATGCGTTTTTATAAC
CCCAATTTCACTCGCTATGACGGCATGAAATTCAACGCTTTTAAAGAGTATAAAAAAAGGGTGTTTGCGAAAAACGAAAA
AAAGAATATCGCTTTTTCTTCTATCAATGTGATCCCTTACCCCAACTCCCAGAACAAACGCTTGTTTTATGTGGTGTTTG
ACCAAGATTACAAAGCCTACCAGCATAACAAGCTCTCTTATAGCTCTAATTCTCAAAAAGAACTCTATGTAGAGATTGAA
AACAATCAAGTGTCTATTATAATGGAAAAATAG

Upstream 100 bases:

>100_bases
AAAAGGTTTTTTTAAACTTGCAAGTGATCGCTCAAAAATCATGGAGCAAGGAAGAAAAGAGCTTGCAAAAACTGGGTTAT
ACCCATCAAAGGAATAGGGA

Downstream 100 bases:

>100_bases
GGCTTTGCTTTAATGAGGGTGGTCTAAACGGATTTTTTAACCCATTCAATCAAGCTTAATACAAAGTTTGATTACAAATT
ACAGAGCTTCCATGGCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ErfK/YbiS/YcfS/YnhG; Periplasmic Protein; Erfk/Ybis/Ycfs/Ynhg Family Protein; 60 KDa Chaperonin (Protein Cpn; TPR Repeat-Containing Protein; ErfK Family Protein

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE
NNQVSIIMEK

Sequences:

>Translated_330_residues
MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE
NNQVSIIMEK
>Mature_330_residues
MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL
EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH
GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE
NNQVSIIMEK

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38523; Mature: 38523

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FGYYQNKQFLFVADKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC
NPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
CCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY
CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHH
QHNKLSYSSNSQKELYVEIENNQVSIIMEK
HCCCCCCCCCCCEEEEEEEECCEEEEEEEC
>Mature Secondary Structure
MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
FGYYQNKQFLFVADKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY
CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH
RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC
NPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN
CCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY
CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHH
QHNKLSYSSNSQKELYVEIENNQVSIIMEK
HCCCCCCCCCCCEEEEEEEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA