Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562917
Identifier: 108562917
GI number: 108562917
Start: 510775
End: 511767
Strand: Direct
Name: 108562917
Synonym: HPAG1_0492
Alternate gene names: NA
Gene position: 510775-511767 (Clockwise)
Preceding gene: 108562916
Following gene: 108562919
Centisome position: 32.0
GC content: 38.27
Gene sequence:
>993_bases TTGAAAAAGGTATTACCGGCTTTATTAATGGGGTTTGTGGGCTTGAATGCTGATGAGCGTTTGTTGGAAATCATGCACCT TTATCAAAAACAAGGCTTGGAAGTGGTGGGTCAAAAGCTGGATTCTTATTTAGCGGATAAAGCTTTTTGGGCAGAAGAGC TTCAAAATAAGGACACGGATTTTGGCTATTATCAAAACAAGCAGTTTTTATTTGTAGCGGATAAATCCAAGCCCAGTTTG GAGTTTTATGAGATAGAAAATAACATGCTTAAAAAAATCAACAGCTCTAAAGCTCTTGTAGGCTCTAAAAAGGGCGATAA AACTTTAGAGGGCGATTTGGCCACGCCTATTGGAGTGTATCGTATCACGCAGAAATTAGAGCGCTTGGATCAATATTATG GCGTTTTGGCTTTTGTAACGAATTACCCTAATTTGTATGACACTTTGAAAAAGCGTACTGGGCATGGCATTTGGGTGCAT GGAATGCCTTTAAATGGCGATAGGAATGAATTGAACACCAAGGGCTGTATTGCGATTGAAAACCCTATTTTAAGCTCTTA TGACAAAGTGTTAAAAGGCGAAAAAGCGTTCCTCATCACCTATGAAGGCAAGTTTTTCCCCAGCACTAAAGAAGAATTGA GCATGATTTTAAGCTCCCTTTTCCAATGGAAAGAAGCTTGGGCTAGAGGCGATTTTGAACGCTACATGCGTTTTTATAAC CCCAATTTCACTCGCTATGACGGCATGAAATTCAACGCTTTTAAAGAGTATAAAAAAAGGGTGTTTGCGAAAAACGAAAA AAAGAATATCGCTTTTTCTTCTATCAATGTGATCCCTTACCCCAACTCCCAGAACAAACGCTTGTTTTATGTGGTGTTTG ACCAAGATTACAAAGCCTACCAGCATAACAAGCTCTCTTATAGCTCTAATTCTCAAAAAGAACTCTATGTAGAGATTGAA AACAATCAAGTGTCTATTATAATGGAAAAATAG
Upstream 100 bases:
>100_bases AAAAGGTTTTTTTAAACTTGCAAGTGATCGCTCAAAAATCATGGAGCAAGGAAGAAAAGAGCTTGCAAAAACTGGGTTAT ACCCATCAAAGGAATAGGGA
Downstream 100 bases:
>100_bases GGCTTTGCTTTAATGAGGGTGGTCTAAACGGATTTTTTAACCCATTCAATCAAGCTTAATACAAAGTTTGATTACAAATT ACAGAGCTTCCATGGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: ErfK/YbiS/YcfS/YnhG; Periplasmic Protein; Erfk/Ybis/Ycfs/Ynhg Family Protein; 60 KDa Chaperonin (Protein Cpn; TPR Repeat-Containing Protein; ErfK Family Protein
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE NNQVSIIMEK
Sequences:
>Translated_330_residues MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE NNQVSIIMEK >Mature_330_residues MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTDFGYYQNKQFLFVADKSKPSL EFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVH GMPLNGDRNELNTKGCIAIENPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYVEIE NNQVSIIMEK
Specific function: Unknown
COG id: COG3034
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38523; Mature: 38523
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTD CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC FGYYQNKQFLFVADKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC NPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN CCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHH QHNKLSYSSNSQKELYVEIENNQVSIIMEK HCCCCCCCCCCCEEEEEEEECCEEEEEEEC >Mature Secondary Structure MKKVLPALLMGFVGLNADERLLEIMHLYQKQGLEVVGQKLDSYLADKAFWAEELQNKDTD CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC FGYYQNKQFLFVADKSKPSLEFYEIENNMLKKINSSKALVGSKKGDKTLEGDLATPIGVY CCEECCCEEEEEECCCCCCEEEEEHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHH RITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEC NPILSSYDKVLKGEKAFLITYEGKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYN CCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC PNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVVFDQDYKAY CCCCEECCEEEHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHH QHNKLSYSSNSQKELYVEIENNQVSIIMEK HCCCCCCCCCCCEEEEEEEECCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA