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The map label for this gene is ydcM [C]

Identifier: 108562919

GI number: 108562919

Start: 512719

End: 512958

Strand: Direct

Name: ydcM [C]

Synonym: HPAG1_0494

Alternate gene names: 108562919

Gene position: 512719-512958 (Clockwise)

Preceding gene: 108562917

Following gene: 108562920

Centisome position: 32.12

GC content: 32.92

Gene sequence:

>240_bases
TTGAGCCATTCTTTAGCTTGTCTTTCTAGCCAGATCACAAGCGAACTTTCAAAGCAATTTGAATGGATAGCAGTTGAAGA
ATTGCAAGTAAAGAACATGACTAAAAGAGCTAAACTCAAAGCTAAACTTAAAAATGTCAAACAAAAGAGTGGGCTTAATC
AATCTATTTTAAACGCTTCATTCTATCAAATCATCTCTTTTTTAGATTGCAAACAACAACATAATAGCGACAAGCAATAG

Upstream 100 bases:

>100_bases
GCGAAAACGGCAACAATAAACCCAATAAAAGCAATAAAGGCTTTAAAAAAGAGAGGGTGGTGCGATAAAAATCTTTAAAC
ATGTCAGATCCTTTTACAAT

Downstream 100 bases:

>100_bases
GGAGATGGTTTCATATTTTTTGCTATAATAGCATGAATTTGTTTCATAGTAACAAATTGAGAATATACCTTATGGAGGTA
ACACTATGGCTGACACAATC

Product: IS606 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MSHSLACLSSQITSELSKQFEWIAVEELQVKNMTKRAKLKAKLKNVKQKSGLNQSILNASFYQIISFLDCKQQHNSDKQ

Sequences:

>Translated_79_residues
MSHSLACLSSQITSELSKQFEWIAVEELQVKNMTKRAKLKAKLKNVKQKSGLNQSILNASFYQIISFLDCKQQHNSDKQ
>Mature_78_residues
SHSLACLSSQITSELSKQFEWIAVEELQVKNMTKRAKLKAKLKNVKQKSGLNQSILNASFYQIISFLDCKQQHNSDKQ

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9043; Mature: 8911

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSLACLSSQITSELSKQFEWIAVEELQVKNMTKRAKLKAKLKNVKQKSGLNQSILNAS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FYQIISFLDCKQQHNSDKQ
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SHSLACLSSQITSELSKQFEWIAVEELQVKNMTKRAKLKAKLKNVKQKSGLNQSILNAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FYQIISFLDCKQQHNSDKQ
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA