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The map label for this gene is yjdF [H]

Identifier: 103488194

GI number: 103488194

Start: 2865992

End: 2866621

Strand: Reverse

Name: yjdF [H]

Synonym: Sala_2717

Alternate gene names: 103488194

Gene position: 2866621-2865992 (Counterclockwise)

Preceding gene: 103488195

Following gene: 103488192

Centisome position: 85.69

GC content: 69.21

Gene sequence:

>630_bases
GTGCCGTCCGTGACCGCTACCCCGCCCGCGCAGCGCCGCCTGATCGGCCTGCTCCTCGCGCTGCTCCTCGCCGCGCAGAT
CGACCAGCCCTATCCGGAGGTCGCGCTGCTCCAGCATGTCCCGACGATGCTGCTGCTCGTCGCGTCGCCCTGGCTGCTCC
GCCGCTGGCCGCTTTCGACCGCTTCGGTCGCCTGTATCGCCCTTTTCCTCGCGCTCCACACGCTCGGCGGGCGCTATGTC
TACAGCAATGTGCCCTATGACGATTGGGCGCTGGCGCTCACGGGAACGAGTTTGTCGGACCTCTTCGGATGGACGCGCAA
TCATTATGACCGGCTCGTCCATTTTGCCTTCGGCGCGCTGTCGGTAATCCCGGTGGCCGAGGTCGCGCGTCGCCGGGGCG
GGCTGGGCGCGCGCGGCGCCATGCTGGCGGTGCTCGGCTGGGTGCTTTCCGTCTCGGCGCTTTACGAAGTCTTCGAATGG
CTGCTCACCATCGTCGCGGCGGGTGAAACCGCCGACCGCTATAACGGGCAACAGGGCGATCTGTGGGACGCGCAAAAGGA
TATGGCGCTCGCGGCGCTCGGCGCGCTCGTCGGGCTGGCGTTCGGGCGGGCGCGACGGCCGGGCGCCTAG

Upstream 100 bases:

>100_bases
GTTCTCCGCTCGTGTCGAGCGAAGTCGAGACACCCGGAAGGCAAGCGTCGCGCCGATGGGCATCTCGACTTCGCTCGATG
CGAGCGGGTAGGGAAGGGAT

Downstream 100 bases:

>100_bases
AGTGCGCGTTTCGGCGCGAACAGCCGGTCGAACCCGTCGGGCGTGTCCGCGACCTTTTCCAGATGCGGCCAGCGCAGCCC
GCCATGATAGGCGATCTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPSVTATPPAQRRLIGLLLALLLAAQIDQPYPEVALLQHVPTMLLLVASPWLLRRWPLSTASVACIALFLALHTLGGRYV
YSNVPYDDWALALTGTSLSDLFGWTRNHYDRLVHFAFGALSVIPVAEVARRRGGLGARGAMLAVLGWVLSVSALYEVFEW
LLTIVAAGETADRYNGQQGDLWDAQKDMALAALGALVGLAFGRARRPGA

Sequences:

>Translated_209_residues
MPSVTATPPAQRRLIGLLLALLLAAQIDQPYPEVALLQHVPTMLLLVASPWLLRRWPLSTASVACIALFLALHTLGGRYV
YSNVPYDDWALALTGTSLSDLFGWTRNHYDRLVHFAFGALSVIPVAEVARRRGGLGARGAMLAVLGWVLSVSALYEVFEW
LLTIVAAGETADRYNGQQGDLWDAQKDMALAALGALVGLAFGRARRPGA
>Mature_208_residues
PSVTATPPAQRRLIGLLLALLLAAQIDQPYPEVALLQHVPTMLLLVASPWLLRRWPLSTASVACIALFLALHTLGGRYVY
SNVPYDDWALALTGTSLSDLFGWTRNHYDRLVHFAFGALSVIPVAEVARRRGGLGARGAMLAVLGWVLSVSALYEVFEWL
LTIVAAGETADRYNGQQGDLWDAQKDMALAALGALVGLAFGRARRPGA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=151, Percent_Identity=37.0860927152318, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22605; Mature: 22473

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSVTATPPAQRRLIGLLLALLLAAQIDQPYPEVALLQHVPTMLLLVASPWLLRRWPLST
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCH
ASVACIALFLALHTLGGRYVYSNVPYDDWALALTGTSLSDLFGWTRNHYDRLVHFAFGAL
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
SVIPVAEVARRRGGLGARGAMLAVLGWVLSVSALYEVFEWLLTIVAAGETADRYNGQQGD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
LWDAQKDMALAALGALVGLAFGRARRPGA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSVTATPPAQRRLIGLLLALLLAAQIDQPYPEVALLQHVPTMLLLVASPWLLRRWPLST
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCH
ASVACIALFLALHTLGGRYVYSNVPYDDWALALTGTSLSDLFGWTRNHYDRLVHFAFGAL
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
SVIPVAEVARRRGGLGARGAMLAVLGWVLSVSALYEVFEWLLTIVAAGETADRYNGQQGD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
LWDAQKDMALAALGALVGLAFGRARRPGA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]