| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488188
Identifier: 103488188
GI number: 103488188
Start: 2857831
End: 2859255
Strand: Reverse
Name: 103488188
Synonym: Sala_2711
Alternate gene names: NA
Gene position: 2859255-2857831 (Counterclockwise)
Preceding gene: 103488189
Following gene: 103488187
Centisome position: 85.47
GC content: 66.32
Gene sequence:
>1425_bases ATGCGTGCTTTGTCAGGGCTTTGCATTCGGGCGATCATTGCGGCCGGGCTGGCCGCCAACCCCGCGGGCGCTCAGGATTC CGTGCGGAGTAATGCGCAGGGCGAGCTGGCCGTCACCATCTACAACGGCGGGCAGTCGCTGGTGCAGGACATCCGCCAGA TCGCCTTTCCCGCCGGCCGGACGCGACAGGAGTTTCCCGACGTTTCGGCGCAAATCCGGCCGCAGACGGTCGCCTTCGCC GCGGCGGACACCGCGATCGTCGAACAGAATTTCGACTATGATCTGCTCTCGCCCAATGCGCTGATGCAGAAAGCGGTGGG GGAGACGGTGACGCTGCTGCGCACCAATCCCGCCACCGGCGCCGAAACGCGCGAGCGCGCCAAGGTGCTCGCGGTCAATG GCGGCGTGGTGTTGCAGATCGGATCGCGAATCGAAATCCTGCGCGACGACGGCATGCCGGTGCGCGTCATCTTCGACAAG ATTCCGCCGAACCTGCGCGCCAAGCCGACCCTGTCGATCACGCTCGACAGCGCGCGCGCGGGAACGCGGCCCGCGACGCT CTCCTATCTGACGAACGGGCTGGGCTGGGCGGCCGACTATGTCTCGCTCTATGACGAGAAAGCGGGGACGATCGACGTGC AGGGGTGGGTGACGCTCACCAACAACACCGGCACGACCTTCGACAATGCGAAGACCCTGCTCGTCGCGGGGACGCCGTCG GCAGGCGGCGCGGTCTCGCCGCGCTATCGCCCGCGGTCGCTGCCGCCCGGCAATCTCCGCCGCGCGGGCACTGAAACCGC GCCGCGCGAACAGCTCGGCGACTATTATCTCTATCCGCTCGCCGAACGCACGACGATCGCCAACGCGCAGACGAAACAGG TGAGCTTCCTCGACGTCAGCGGCGTTCCGGCCCAGAAAATCTATGAGTTCACCGTCGGCGGGTTCGACACGATGACCGAA CCCGCGAGCGCGGCGAGCGTCATCAAGTTCAGCACCAGCGCGAAAGGCGGCGGCCTCGGCGACGCGCTGCCGGCGGGAAC GGTGCGCTTCTATCAGCGCGACCTGCGCGGCGACCCGCAGTTTATCGGCGAAAACAACATCGGCCACACGCCGATGGGCA GCGAGTTGGGCCTTGCCACCGGCCTTGCGTTCGACGTCAAGGTGCAGGCGACGGTCGTGGAGCGTGAGCGCGTGTCGGCA AACATCACGCGCTCGTCGATGTCCTATACGCTCACCAACGCGCGTGCGCAGCCGGTGACGCTCGACCTCATCCAGCGCGG ACTCGACTGGTATTGGGACGAAACGCGCATCCTTGCCGAAAGCCGGAAAAGCGAGCGGCTTGACAGCGACGGGACGCGGT GGCGCGTTGAACTGCCCGCCAATGGCGAGGCGACGATCACCGCGACATTCGAAACGCGCTATTGA
Upstream 100 bases:
>100_bases ACCGACGTCGAGGCTGCCGAATAGGGCTGTCTTTTCAAGCTGGCCTTTCGCCGGGACATGCCATAGCCTCTCCGCGCGAT CGTCGCGGGGAGGCTTTTTT
Downstream 100 bases:
>100_bases TTCGCGGGCCATGATGCGCCGCTGGCCGCTCCTGCTCACGATGCTCGCCGCATCTCCGGCGGCGTCGCAACCCATCGTCA CCTCGCTCGCGCCCGACACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY
Sequences:
>Translated_474_residues MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY >Mature_474_residues MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY
Specific function: Unknown
COG id: COG5316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50964; Mature: 50964
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGR CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC TRQEFPDVSAQIRPQTVAFAAADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATG CHHHCCCCCCEECCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCC AETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDKIPPNLRAKPTLSITLDSARA CCCCCCEEEEEECCCEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCC GTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS CCCCHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCEEECCCCCCEEEEEECC GVPAQKIYEFTVGGFDTMTEPASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQ CCCHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC FIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSANITRSSMSYTLTNARAQPVT CCCCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEEHHHHHCEEECCCEEEEEECCCCCCEE LDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECC >Mature Secondary Structure MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGR CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC TRQEFPDVSAQIRPQTVAFAAADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATG CHHHCCCCCCEECCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCC AETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDKIPPNLRAKPTLSITLDSARA CCCCCCEEEEEECCCEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCC GTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS CCCCHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCEEECCCCCCEEEEEECC GVPAQKIYEFTVGGFDTMTEPASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQ CCCHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC FIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSANITRSSMSYTLTNARAQPVT CCCCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEEHHHHHCEEECCCEEEEEECCCCCCEE LDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA