Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488188

Identifier: 103488188

GI number: 103488188

Start: 2857831

End: 2859255

Strand: Reverse

Name: 103488188

Synonym: Sala_2711

Alternate gene names: NA

Gene position: 2859255-2857831 (Counterclockwise)

Preceding gene: 103488189

Following gene: 103488187

Centisome position: 85.47

GC content: 66.32

Gene sequence:

>1425_bases
ATGCGTGCTTTGTCAGGGCTTTGCATTCGGGCGATCATTGCGGCCGGGCTGGCCGCCAACCCCGCGGGCGCTCAGGATTC
CGTGCGGAGTAATGCGCAGGGCGAGCTGGCCGTCACCATCTACAACGGCGGGCAGTCGCTGGTGCAGGACATCCGCCAGA
TCGCCTTTCCCGCCGGCCGGACGCGACAGGAGTTTCCCGACGTTTCGGCGCAAATCCGGCCGCAGACGGTCGCCTTCGCC
GCGGCGGACACCGCGATCGTCGAACAGAATTTCGACTATGATCTGCTCTCGCCCAATGCGCTGATGCAGAAAGCGGTGGG
GGAGACGGTGACGCTGCTGCGCACCAATCCCGCCACCGGCGCCGAAACGCGCGAGCGCGCCAAGGTGCTCGCGGTCAATG
GCGGCGTGGTGTTGCAGATCGGATCGCGAATCGAAATCCTGCGCGACGACGGCATGCCGGTGCGCGTCATCTTCGACAAG
ATTCCGCCGAACCTGCGCGCCAAGCCGACCCTGTCGATCACGCTCGACAGCGCGCGCGCGGGAACGCGGCCCGCGACGCT
CTCCTATCTGACGAACGGGCTGGGCTGGGCGGCCGACTATGTCTCGCTCTATGACGAGAAAGCGGGGACGATCGACGTGC
AGGGGTGGGTGACGCTCACCAACAACACCGGCACGACCTTCGACAATGCGAAGACCCTGCTCGTCGCGGGGACGCCGTCG
GCAGGCGGCGCGGTCTCGCCGCGCTATCGCCCGCGGTCGCTGCCGCCCGGCAATCTCCGCCGCGCGGGCACTGAAACCGC
GCCGCGCGAACAGCTCGGCGACTATTATCTCTATCCGCTCGCCGAACGCACGACGATCGCCAACGCGCAGACGAAACAGG
TGAGCTTCCTCGACGTCAGCGGCGTTCCGGCCCAGAAAATCTATGAGTTCACCGTCGGCGGGTTCGACACGATGACCGAA
CCCGCGAGCGCGGCGAGCGTCATCAAGTTCAGCACCAGCGCGAAAGGCGGCGGCCTCGGCGACGCGCTGCCGGCGGGAAC
GGTGCGCTTCTATCAGCGCGACCTGCGCGGCGACCCGCAGTTTATCGGCGAAAACAACATCGGCCACACGCCGATGGGCA
GCGAGTTGGGCCTTGCCACCGGCCTTGCGTTCGACGTCAAGGTGCAGGCGACGGTCGTGGAGCGTGAGCGCGTGTCGGCA
AACATCACGCGCTCGTCGATGTCCTATACGCTCACCAACGCGCGTGCGCAGCCGGTGACGCTCGACCTCATCCAGCGCGG
ACTCGACTGGTATTGGGACGAAACGCGCATCCTTGCCGAAAGCCGGAAAAGCGAGCGGCTTGACAGCGACGGGACGCGGT
GGCGCGTTGAACTGCCCGCCAATGGCGAGGCGACGATCACCGCGACATTCGAAACGCGCTATTGA

Upstream 100 bases:

>100_bases
ACCGACGTCGAGGCTGCCGAATAGGGCTGTCTTTTCAAGCTGGCCTTTCGCCGGGACATGCCATAGCCTCTCCGCGCGAT
CGTCGCGGGGAGGCTTTTTT

Downstream 100 bases:

>100_bases
TTCGCGGGCCATGATGCGCCGCTGGCCGCTCCTGCTCACGATGCTCGCCGCATCTCCGGCGGCGTCGCAACCCATCGTCA
CCTCGCTCGCGCCCGACACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA
AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK
IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS
AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE
PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA
NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY

Sequences:

>Translated_474_residues
MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA
AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK
IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS
AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE
PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA
NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY
>Mature_474_residues
MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGRTRQEFPDVSAQIRPQTVAFA
AADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATGAETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDK
IPPNLRAKPTLSITLDSARAGTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS
AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVSGVPAQKIYEFTVGGFDTMTE
PASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQFIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSA
NITRSSMSYTLTNARAQPVTLDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY

Specific function: Unknown

COG id: COG5316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50964; Mature: 50964

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGR
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
TRQEFPDVSAQIRPQTVAFAAADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATG
CHHHCCCCCCEECCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCC
AETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDKIPPNLRAKPTLSITLDSARA
CCCCCCEEEEEECCCEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCC
GTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS
CCCCHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC
AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCEEECCCCCCEEEEEECC
GVPAQKIYEFTVGGFDTMTEPASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQ
CCCHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
FIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSANITRSSMSYTLTNARAQPVT
CCCCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEEHHHHHCEEECCCEEEEEECCCCCCEE
LDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY
HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECC
>Mature Secondary Structure
MRALSGLCIRAIIAAGLAANPAGAQDSVRSNAQGELAVTIYNGGQSLVQDIRQIAFPAGR
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
TRQEFPDVSAQIRPQTVAFAAADTAIVEQNFDYDLLSPNALMQKAVGETVTLLRTNPATG
CHHHCCCCCCEECCEEEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCC
AETRERAKVLAVNGGVVLQIGSRIEILRDDGMPVRVIFDKIPPNLRAKPTLSITLDSARA
CCCCCCEEEEEECCCEEEEECCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCC
GTRPATLSYLTNGLGWAADYVSLYDEKAGTIDVQGWVTLTNNTGTTFDNAKTLLVAGTPS
CCCCHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC
AGGAVSPRYRPRSLPPGNLRRAGTETAPREQLGDYYLYPLAERTTIANAQTKQVSFLDVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCEEECCCCCCEEEEEECC
GVPAQKIYEFTVGGFDTMTEPASAASVIKFSTSAKGGGLGDALPAGTVRFYQRDLRGDPQ
CCCHHHEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
FIGENNIGHTPMGSELGLATGLAFDVKVQATVVERERVSANITRSSMSYTLTNARAQPVT
CCCCCCCCCCCCCCCCCHHHCEEEEEEEEEEEEEHHHHHCEEECCCEEEEEECCCCCCEE
LDLIQRGLDWYWDETRILAESRKSERLDSDGTRWRVELPANGEATITATFETRY
HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA