Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488187

Identifier: 103488187

GI number: 103488187

Start: 2856261

End: 2857820

Strand: Reverse

Name: 103488187

Synonym: Sala_2710

Alternate gene names: NA

Gene position: 2857820-2856261 (Counterclockwise)

Preceding gene: 103488188

Following gene: 103488184

Centisome position: 85.43

GC content: 66.73

Gene sequence:

>1560_bases
ATGATGCGCCGCTGGCCGCTCCTGCTCACGATGCTCGCCGCATCTCCGGCGGCGTCGCAACCCATCGTCACCTCGCTCGC
GCCCGACACGGTATCGGTCAGCGTGTTCCGCGATCCCGACCGCGACGAGGGCGGCGAGATTGCGCCGAACTGGCTGGAAG
GCTTTGCGCTCATCTCCGAAACGCGCAGCGTCGACCTGCCCGCTGGCGAAGCGACGTTGCGATTCGAGGGGGTCGCCGAA
GGAATGATTGCGGTATCGGCGATCGTCACCGGCCTGCCCGGCGGCGTGGTGCAGAAGAATCGCGACGCGGCGCTGCTGTC
GCCCGCGAGCCTGCTCGACGGCTCGCTCGGCAACCGCGTCCACCTCCGCCGCACCGACCGTGCGACCGGAAAGGTGACCG
AAGAGGAGGCGATCATCCGCTCGGGCCCAGCGGGCGCCGTCGTGCTGCAAACCGCCGCGGGCTATGAAGCGCTGCGCTGC
ACGGGGCTTCCCGAAACGATCCTTTACGATGGCGTGCCGCCGGGGCTGACCGCCAAACCGACCTTGTCGGTGACGACGCG
CAGCCCCGCGGCGGCGCGCGCGATGGTGACGCTGACCTATTTGTCGACCGGCTTCGACTGGGCGAGCAACTATGTCGCGC
GTGTGCGCGACGATGGCAAGACGCTCGACCTTTTCGCATGGCTGACCGTTGCCAACAGCAATGGCGAGAGCTTTGCCGAT
GCACGGCTCGCGGCGATCGCGGGCACGCTCAACCAGGTGAGCGATTTCGAGGAACTGGCAGACCGTCCGCGCACACCGCC
GCTTCGCCTCAGCTGCTTTCCGACCGGCAGCGGGCGTTATGGCGTCCCGCGCTCACCACCACCCCCGCCAGCGCCGCCGA
TGATGATGTCCAGTGCAGGAATGGAGGATATTGTCGTCACCGGATCGCGAATGCAGCGCGCCGAAATGATGTCGCCGCTC
GCGATCGTCGCGAGCCAGGAGGATCTCGGTGACCTCAAGCTCTATCGCGTGCCGATCCCCGTCACCGTCGCCGCGAACGG
GCAGAAACAGGTGGCGCTGCTCGTCAAGGATCGCGTGCCCTTCCGCACCATCTACCGGCTGCGCATGGGACTGGGCGATG
AAGGCCGGGCGATGACGCCCGATATCCTGCTGCGGATGGAGAACAGCGAAGCGGGCGGGCTTGGCATGCCGCTGCCGGGC
GGGCAGGCTGCGGTGTTCGAGCGCGTCGGCGACCGGGACCTGCTCGTCGGCGAGGGCACGATGCGCGACCACGCGGTCGG
CGAAAAGGTCGACCTTGTGATCGGTGAGAGCAGCCAGGTGCGAATCGATGTCGAAAATCATGTCCCGCCGAAGAATCGCG
AGCATGATTACCGCGTGACCGTGATCAATGCGAAGCCGCGCCCGGCCGATGTCGAGATCGGCTTTCTGGTCGACGACCAT
GAAGGGCTCGATTCGCGCATCCGGAAACTGCCGCGCCGCGACGGCCTGCTAACTTGGATCGTCCGCGTTCCGGCGAACGG
CAGCAAGACGTTTCGCTATCGGGCGAAGGCGGAGGATTAA

Upstream 100 bases:

>100_bases
CGGCTTGACAGCGACGGGACGCGGTGGCGCGTTGAACTGCCCGCCAATGGCGAGGCGACGATCACCGCGACATTCGAAAC
GCGCTATTGATTCGCGGGCC

Downstream 100 bases:

>100_bases
ACCGGCGGCAGCGCGCGCGGACGGTGATTCTCGTCGAGCGCGACGAAAGTGAAGAGGCCGCCGGTGACCTTTTCCTCGGT
GCGTCCGCCGTCGCGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE
GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC
TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD
ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL
AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG
GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH
EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED

Sequences:

>Translated_519_residues
MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE
GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC
TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD
ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL
AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG
GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH
EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED
>Mature_519_residues
MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE
GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC
TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD
ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL
AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG
GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH
EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED

Specific function: Unknown

COG id: COG5316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55857; Mature: 55857

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISE
CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHC
TRSVDLPAGEATLRFEGVAEGMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRV
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCCEEECCHHHHCCCCCCEE
HLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRCTGLPETILYDGVPPGLTAKP
EEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHEECCCCCCCCCCC
TLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD
EEEEEECCCCHHEEEEEEEEECCCCCHHHCHHEEECCCCCEEEEEEEEEEECCCCCCHHH
ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCC
MEDIVVTGSRMQRAEMMSPLAIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVP
CCEEEEECCHHHHHHHCCCEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEEEEECCCC
FRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPGGQAAVFERVGDRDLLVGEGT
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCC
MRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH
CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECC
EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED
CCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCC
>Mature Secondary Structure
MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISE
CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHC
TRSVDLPAGEATLRFEGVAEGMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRV
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCCEEECCHHHHCCCCCCEE
HLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRCTGLPETILYDGVPPGLTAKP
EEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHEECCCCCCCCCCC
TLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD
EEEEEECCCCHHEEEEEEEEECCCCCHHHCHHEEECCCCCEEEEEEEEEEECCCCCCHHH
ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAG
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCC
MEDIVVTGSRMQRAEMMSPLAIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVP
CCEEEEECCHHHHHHHCCCEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEEEEECCCC
FRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPGGQAAVFERVGDRDLLVGEGT
HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCC
MRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH
CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECC
EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED
CCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA