| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488187
Identifier: 103488187
GI number: 103488187
Start: 2856261
End: 2857820
Strand: Reverse
Name: 103488187
Synonym: Sala_2710
Alternate gene names: NA
Gene position: 2857820-2856261 (Counterclockwise)
Preceding gene: 103488188
Following gene: 103488184
Centisome position: 85.43
GC content: 66.73
Gene sequence:
>1560_bases ATGATGCGCCGCTGGCCGCTCCTGCTCACGATGCTCGCCGCATCTCCGGCGGCGTCGCAACCCATCGTCACCTCGCTCGC GCCCGACACGGTATCGGTCAGCGTGTTCCGCGATCCCGACCGCGACGAGGGCGGCGAGATTGCGCCGAACTGGCTGGAAG GCTTTGCGCTCATCTCCGAAACGCGCAGCGTCGACCTGCCCGCTGGCGAAGCGACGTTGCGATTCGAGGGGGTCGCCGAA GGAATGATTGCGGTATCGGCGATCGTCACCGGCCTGCCCGGCGGCGTGGTGCAGAAGAATCGCGACGCGGCGCTGCTGTC GCCCGCGAGCCTGCTCGACGGCTCGCTCGGCAACCGCGTCCACCTCCGCCGCACCGACCGTGCGACCGGAAAGGTGACCG AAGAGGAGGCGATCATCCGCTCGGGCCCAGCGGGCGCCGTCGTGCTGCAAACCGCCGCGGGCTATGAAGCGCTGCGCTGC ACGGGGCTTCCCGAAACGATCCTTTACGATGGCGTGCCGCCGGGGCTGACCGCCAAACCGACCTTGTCGGTGACGACGCG CAGCCCCGCGGCGGCGCGCGCGATGGTGACGCTGACCTATTTGTCGACCGGCTTCGACTGGGCGAGCAACTATGTCGCGC GTGTGCGCGACGATGGCAAGACGCTCGACCTTTTCGCATGGCTGACCGTTGCCAACAGCAATGGCGAGAGCTTTGCCGAT GCACGGCTCGCGGCGATCGCGGGCACGCTCAACCAGGTGAGCGATTTCGAGGAACTGGCAGACCGTCCGCGCACACCGCC GCTTCGCCTCAGCTGCTTTCCGACCGGCAGCGGGCGTTATGGCGTCCCGCGCTCACCACCACCCCCGCCAGCGCCGCCGA TGATGATGTCCAGTGCAGGAATGGAGGATATTGTCGTCACCGGATCGCGAATGCAGCGCGCCGAAATGATGTCGCCGCTC GCGATCGTCGCGAGCCAGGAGGATCTCGGTGACCTCAAGCTCTATCGCGTGCCGATCCCCGTCACCGTCGCCGCGAACGG GCAGAAACAGGTGGCGCTGCTCGTCAAGGATCGCGTGCCCTTCCGCACCATCTACCGGCTGCGCATGGGACTGGGCGATG AAGGCCGGGCGATGACGCCCGATATCCTGCTGCGGATGGAGAACAGCGAAGCGGGCGGGCTTGGCATGCCGCTGCCGGGC GGGCAGGCTGCGGTGTTCGAGCGCGTCGGCGACCGGGACCTGCTCGTCGGCGAGGGCACGATGCGCGACCACGCGGTCGG CGAAAAGGTCGACCTTGTGATCGGTGAGAGCAGCCAGGTGCGAATCGATGTCGAAAATCATGTCCCGCCGAAGAATCGCG AGCATGATTACCGCGTGACCGTGATCAATGCGAAGCCGCGCCCGGCCGATGTCGAGATCGGCTTTCTGGTCGACGACCAT GAAGGGCTCGATTCGCGCATCCGGAAACTGCCGCGCCGCGACGGCCTGCTAACTTGGATCGTCCGCGTTCCGGCGAACGG CAGCAAGACGTTTCGCTATCGGGCGAAGGCGGAGGATTAA
Upstream 100 bases:
>100_bases CGGCTTGACAGCGACGGGACGCGGTGGCGCGTTGAACTGCCCGCCAATGGCGAGGCGACGATCACCGCGACATTCGAAAC GCGCTATTGATTCGCGGGCC
Downstream 100 bases:
>100_bases ACCGGCGGCAGCGCGCGCGGACGGTGATTCTCGTCGAGCGCGACGAAAGTGAAGAGGCCGCCGGTGACCTTTTCCTCGGT GCGTCCGCCGTCGCGCGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED
Sequences:
>Translated_519_residues MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED >Mature_519_residues MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISETRSVDLPAGEATLRFEGVAE GMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRVHLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRC TGLPETILYDGVPPGLTAKPTLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAGMEDIVVTGSRMQRAEMMSPL AIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVPFRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPG GQAAVFERVGDRDLLVGEGTMRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED
Specific function: Unknown
COG id: COG5316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55857; Mature: 55857
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISE CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHC TRSVDLPAGEATLRFEGVAEGMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRV CCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCCEEECCHHHHCCCCCCEE HLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRCTGLPETILYDGVPPGLTAKP EEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHEECCCCCCCCCCC TLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD EEEEEECCCCHHEEEEEEEEECCCCCHHHCHHEEECCCCCEEEEEEEEEEECCCCCCHHH ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAG HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCC MEDIVVTGSRMQRAEMMSPLAIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVP CCEEEEECCHHHHHHHCCCEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEEEEECCCC FRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPGGQAAVFERVGDRDLLVGEGT HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCC MRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECC EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED CCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCC >Mature Secondary Structure MMRRWPLLLTMLAASPAASQPIVTSLAPDTVSVSVFRDPDRDEGGEIAPNWLEGFALISE CCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHC TRSVDLPAGEATLRFEGVAEGMIAVSAIVTGLPGGVVQKNRDAALLSPASLLDGSLGNRV CCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCCEEECCHHHHCCCCCCEE HLRRTDRATGKVTEEEAIIRSGPAGAVVLQTAAGYEALRCTGLPETILYDGVPPGLTAKP EEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHEECCCCCCCCCCC TLSVTTRSPAAARAMVTLTYLSTGFDWASNYVARVRDDGKTLDLFAWLTVANSNGESFAD EEEEEECCCCHHEEEEEEEEECCCCCHHHCHHEEECCCCCEEEEEEEEEEECCCCCCHHH ARLAAIAGTLNQVSDFEELADRPRTPPLRLSCFPTGSGRYGVPRSPPPPPAPPMMMSSAG HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCC MEDIVVTGSRMQRAEMMSPLAIVASQEDLGDLKLYRVPIPVTVAANGQKQVALLVKDRVP CCEEEEECCHHHHHHHCCCEEEEECCCCCCCEEEEEECCEEEEECCCCCEEEEEEECCCC FRTIYRLRMGLGDEGRAMTPDILLRMENSEAGGLGMPLPGGQAAVFERVGDRDLLVGEGT HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCC MRDHAVGEKVDLVIGESSQVRIDVENHVPPKNREHDYRVTVINAKPRPADVEIGFLVDDH CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECC EGLDSRIRKLPRRDGLLTWIVRVPANGSKTFRYRAKAED CCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA