Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488128

Identifier: 103488128

GI number: 103488128

Start: 2795849

End: 2796895

Strand: Reverse

Name: 103488128

Synonym: Sala_2651

Alternate gene names: NA

Gene position: 2796895-2795849 (Counterclockwise)

Preceding gene: 103488129

Following gene: 103488127

Centisome position: 83.61

GC content: 67.72

Gene sequence:

>1047_bases
ATGCAAAGCCCCGCAACCATCATTGCCGAACGTCTCGCCGAGAATGCGGAGAGCGTGTGTCGCCGCTACCTGCCCAACGG
GCACCGGGAAGGCCGCTACTGGCTGGTCGGCGACGTTCACAACACGCCGGGGCGAAGCCTCTATGTCCGTCTGGCCGCGT
CCCCCGACGGGCGCGGCCAAGCCGGCAAATGGACCGATGCGCAGAGCGGCGATCATGGCGATCTGCTCGACATCATCGCC
ATCACCCGGAACTGCCGGACCATGCGCGAGACGCTGGACGAAGCCCGGCATTTTCTGCGCCTGCCCATACCGCCGCCGTC
CGAGGATAAGCCGGTTAGACGCAGCAAGGCGCCGACCGGCACACGGCAAGCAGCGCAGCGGCTCTGGGCAGCGGCGAAGC
CAGTCGCCGGAAGCCCCGTCGCCGCCTATCTCGCATTCCGGCAAATCATCGACCTCACCGGCTGCGAGGCGCTCCGATTT
CACGGCAACTGCTGGTATCGCGCGTCGAAGGACGACGCACCCGATACGCGTCCCGCATGGCCGGCGATGATCGCGGCGGT
CACCGATCTCGACGGCAGCGTCACCGGGGCTCATCGGACCTGGCTGGAACCGGGCAGCTCCGACAAAGCTCCCGTCGCCT
ATCCGCGCCGCGCCATGGGCTATCTGCTCGGACACGGCGTCCGGTTCGGGCCAGGTGGCCCCGTCATGATGGCGGGCGAA
GGCATCGAGACCATGCTGTCGCTGCGCCAGGTCATGCCGCTGATGCCGGCGATCGCCGGGCTCTCGGCCGCGCATCTCGC
TGCCATTCTGTTCCCGGCCATGCTGCGCCGGCTCTATGTCGCACGCGATGACGATCCTGCCGGTGCGGGGGCGTTGAAGA
CGCTCACCGAGCGGGCGATCCCGGCGGGGATCGAGGTGGTGCCGCTCGAACCCAGGCTTGGGGATTTCAACGACGATCTT
ACCACCTTCGGGCGGGAGCGGCTCACCCAGAGGCTGCGGGATCAACTCCGGACGGAGGATGCGGAGCGCTTCCTGATGCA
GGGGTAA

Upstream 100 bases:

>100_bases
TGCCGGCAGGGGCTGTCGGCGCCGATGTGCTGGACCGGCTGCTCGAGCGATATCCGATCGAACGGCTCTCCATGCGCAAG
GCCGCCTGAGGAGCCCCGCG

Downstream 100 bases:

>100_bases
GGGTTGGACTGCGGGGAACGTCTCTAGTCGCGGGTGATCACGCTCATCACCGGCATCTTCGAGACGCCGCGCGCTCGTGC
CTTCGGTAGAGGGCGACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA
ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF
HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE
GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL
TTFGRERLTQRLRDQLRTEDAERFLMQG

Sequences:

>Translated_348_residues
MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA
ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF
HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE
GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL
TTFGRERLTQRLRDQLRTEDAERFLMQG
>Mature_348_residues
MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQAGKWTDAQSGDHGDLLDIIA
ITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTGTRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRF
HGNCWYRASKDDAPDTRPAWPAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE
GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAIPAGIEVVPLEPRLGDFNDDL
TTFGRERLTQRLRDQLRTEDAERFLMQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38088; Mature: 38088

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC
AGKWTDAQSGDHGDLLDIIAITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHCCCCCC
TRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRFHGNCWYRASKDDAPDTRPAW
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCH
PAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE
HHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEEEECC
GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAI
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
PAGIEVVPLEPRLGDFNDDLTTFGRERLTQRLRDQLRTEDAERFLMQG
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MQSPATIIAERLAENAESVCRRYLPNGHREGRYWLVGDVHNTPGRSLYVRLAASPDGRGQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCC
AGKWTDAQSGDHGDLLDIIAITRNCRTMRETLDEARHFLRLPIPPPSEDKPVRRSKAPTG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHCCCCCC
TRQAAQRLWAAAKPVAGSPVAAYLAFRQIIDLTGCEALRFHGNCWYRASKDDAPDTRPAW
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCH
PAMIAAVTDLDGSVTGAHRTWLEPGSSDKAPVAYPRRAMGYLLGHGVRFGPGGPVMMAGE
HHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCEEEECC
GIETMLSLRQVMPLMPAIAGLSAAHLAAILFPAMLRRLYVARDDDPAGAGALKTLTERAI
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
PAGIEVVPLEPRLGDFNDDLTTFGRERLTQRLRDQLRTEDAERFLMQG
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA