| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488126
Identifier: 103488126
GI number: 103488126
Start: 2793308
End: 2794231
Strand: Reverse
Name: 103488126
Synonym: Sala_2649
Alternate gene names: NA
Gene position: 2794231-2793308 (Counterclockwise)
Preceding gene: 103488127
Following gene: 103488125
Centisome position: 83.53
GC content: 66.88
Gene sequence:
>924_bases GTGACGCTCGTGATCACCACCTGTACGAATCGCAAGCGCAAGCCGGTTTCCGACGCTCTTCACATGGCCGCCCTCCCGCC AGCCGACTTCGATGGTCTGGCCCGTCAATGGTCGCAACGCCTGGCGGCTGAGCCGACGCGGTTCCCCGGGGAAGACATTT ACGGCGGTCGCGGCTTTCGCGAAGCCGTCACCGCGGCGGAATTACTCGACGCAAGACTGCTGGTCGTCTCCGCGGGTCTT GGCCTGATCGACGTTTCGACAGCGGTTCCGCCCTATGCCTGCACCGTGCTCGTCGACGCCCCGGACAGCGTCCGCTCGCG CGTAACCGGCGCGTTCAGCGTCGAGCGCTGGTGGGAGGCGCTGTGCAAGGTCTCTCCTTTTGCGGTCACGCTACATGATG CGGTCGAGGGCGCGCACGGGCTGATCTGCGCGGCACTGTCAGACGCCTATATCGAGATGATCGCGGAGGATCTTCTCGCC CTTCCAACATCGATGCTCGGTCGGCTCAGGCTCTTTACCCGCGCGCGCCTCGATCGCGTTCCTGCCGCACTACAGCCCTT CGTCATGCCCTATGACGACCGGCTCGATGGTCCGGACAGCTGCAATCGCGGCACGCGCAGCGATTTTGCCGGCCGGGCGC TTCGCCATTTCGCAGAACTGACGCGCGGCGAGCCGCAAGGACGTTCGGCGGCCGAGCACGCCGCGGAGGTGTCGGCGACG CTGGACGGTTGGCGGATGCCGGCCAAGGTGGACCGCATCCGCCATGATGACGCAGCGCTGCTTGATCTGATCCGGGCGCA TTGGGATGCCGAGCGCGGCAGTTCCTCGCGGCTGCTGCGCCGCTTCCGCGACGATCTCGGGATCGCGTGCGAGCAGGGCC GGTTCGCGGAATTGGCCCGCCAGGTGCGGAGTGAGCGCGCATGA
Upstream 100 bases:
>100_bases AAAACGTTCGATATGATTTCGTGCATTAAATGTGGCAAAACGTGCGATCCATCGTTATGGATTAATGCATGCGCTAATGC GGATAGGGGGCCTATAATTA
Downstream 100 bases:
>100_bases GCGGACGCGAAACTCTCAAGGTCCGCGCGGTGCGCGCCGAGCAGGCCGGCGGGACCAGTGTCTTTGCGTTCTTCCTCTAT GGCGCCGATATCAACCGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MTLVITTCTNRKRKPVSDALHMAALPPADFDGLARQWSQRLAAEPTRFPGEDIYGGRGFREAVTAAELLDARLLVVSAGL GLIDVSTAVPPYACTVLVDAPDSVRSRVTGAFSVERWWEALCKVSPFAVTLHDAVEGAHGLICAALSDAYIEMIAEDLLA LPTSMLGRLRLFTRARLDRVPAALQPFVMPYDDRLDGPDSCNRGTRSDFAGRALRHFAELTRGEPQGRSAAEHAAEVSAT LDGWRMPAKVDRIRHDDAALLDLIRAHWDAERGSSSRLLRRFRDDLGIACEQGRFAELARQVRSERA
Sequences:
>Translated_307_residues MTLVITTCTNRKRKPVSDALHMAALPPADFDGLARQWSQRLAAEPTRFPGEDIYGGRGFREAVTAAELLDARLLVVSAGL GLIDVSTAVPPYACTVLVDAPDSVRSRVTGAFSVERWWEALCKVSPFAVTLHDAVEGAHGLICAALSDAYIEMIAEDLLA LPTSMLGRLRLFTRARLDRVPAALQPFVMPYDDRLDGPDSCNRGTRSDFAGRALRHFAELTRGEPQGRSAAEHAAEVSAT LDGWRMPAKVDRIRHDDAALLDLIRAHWDAERGSSSRLLRRFRDDLGIACEQGRFAELARQVRSERA >Mature_306_residues TLVITTCTNRKRKPVSDALHMAALPPADFDGLARQWSQRLAAEPTRFPGEDIYGGRGFREAVTAAELLDARLLVVSAGLG LIDVSTAVPPYACTVLVDAPDSVRSRVTGAFSVERWWEALCKVSPFAVTLHDAVEGAHGLICAALSDAYIEMIAEDLLAL PTSMLGRLRLFTRARLDRVPAALQPFVMPYDDRLDGPDSCNRGTRSDFAGRALRHFAELTRGEPQGRSAAEHAAEVSATL DGWRMPAKVDRIRHDDAALLDLIRAHWDAERGSSSRLLRRFRDDLGIACEQGRFAELARQVRSERA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33731; Mature: 33600
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLVITTCTNRKRKPVSDALHMAALPPADFDGLARQWSQRLAAEPTRFPGEDIYGGRGFR CEEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH EAVTAAELLDARLLVVSAGLGLIDVSTAVPPYACTVLVDAPDSVRSRVTGAFSVERWWEA HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH LCKVSPFAVTLHDAVEGAHGLICAALSDAYIEMIAEDLLALPTSMLGRLRLFTRARLDRV HHCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PAALQPFVMPYDDRLDGPDSCNRGTRSDFAGRALRHFAELTRGEPQGRSAAEHAAEVSAT CHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LDGWRMPAKVDRIRHDDAALLDLIRAHWDAERGSSSRLLRRFRDDLGIACEQGRFAELAR HCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH QVRSERA HHHHCCC >Mature Secondary Structure TLVITTCTNRKRKPVSDALHMAALPPADFDGLARQWSQRLAAEPTRFPGEDIYGGRGFR EEEEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH EAVTAAELLDARLLVVSAGLGLIDVSTAVPPYACTVLVDAPDSVRSRVTGAFSVERWWEA HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH LCKVSPFAVTLHDAVEGAHGLICAALSDAYIEMIAEDLLALPTSMLGRLRLFTRARLDRV HHCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PAALQPFVMPYDDRLDGPDSCNRGTRSDFAGRALRHFAELTRGEPQGRSAAEHAAEVSAT CHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LDGWRMPAKVDRIRHDDAALLDLIRAHWDAERGSSSRLLRRFRDDLGIACEQGRFAELAR HCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH QVRSERA HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA