Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488125

Identifier: 103488125

GI number: 103488125

Start: 2792190

End: 2793311

Strand: Reverse

Name: 103488125

Synonym: Sala_2648

Alternate gene names: NA

Gene position: 2793311-2792190 (Counterclockwise)

Preceding gene: 103488126

Following gene: 103488124

Centisome position: 83.5

GC content: 65.6

Gene sequence:

>1122_bases
ATGAGCGGACGCGAAACTCTCAAGGTCCGCGCGGTGCGCGCCGAGCAGGCCGGCGGGACCAGTGTCTTTGCGTTCTTCCT
CTATGGCGCCGATATCAACCGGGTGGCGGATATCAGCCGGATCCGCCGCGACGATCAGGAGCTTAAGGGCTTCCAACGCC
GCGAGATCCGCGATCACGTTAAGGAGATCACGGCCTTTCTCGACAGCGGCCCGGTGCTGTTTCCCAATGCGATCATCCTT
GCCATCTCGCCCGAAGTGGAGTTCGCCTCGGCGCGTGGCCGCTCGCCGGGCAATATGTGCGAAGTGGGGGATGCGGGCAC
GCTGTCGATACCGATCTATCCCGAGGGCCGGCGCGCCGCCTGGATCGTCGATGGGCAGCAGCGCTCGCTGGCGCTGAGCG
CCGCCAAGGACCGAACGATCGCCGTACCGGTGGTCGGGTTCGTGTCGGATGCGCTCGAGACGCAGCGCGAGCAGTTCATC
CTGGTCAACAAGGCGCGGCCGCTGCCGACCCGGCTGATCAACGAACTGCTGCCCGAGGTGAGCGTGTTGCTGCCGCGCGA
TCTGGCGGCACGCCGGTTGCCGAGCGCGCTGTGCGAAGCGCTCAACACCGATCCGAATTCGCCCTTCTTCGGCCTGATCA
AGCGCGAGTCCGATGCGAAGGACCGTGCCGGCATCGTCACCGACAATGCGCTCATTGAAACGATGAAGGCGAGCCTCAAG
ACCCCAGCCGGGGCGCTCGGCCAATTCAAGCATAATGGTGACGGCAACGACACGGTCGCCATGTACGATGCGCTTCTCCT
CTACTGGTCGGCGGTCCGCGACACCTTTCCAGAGGCCTGGGGCAAGCCACCGGCCGACAGCCGACTGATGCACTCCGCCG
GCATCCGCGCGATGGGCGCGTTGATGGATACGATCATGCTGCGCGCCGATGCGGCGCCGGACAAGGTGGCGGCGGTGCGC
ACGATGCTCAAGCGCATCGCGCCCTTGTGCTGCTGGACCGCCGGCACATGGGAGGGCCTCGGCCTTGCCTGGAACGAAAT
CCAGTCGACCTCGCAGCACATCACCAAGCTCAGCGATCATCTGGTGCACATCGAGCGCGATCTCGCGCGGGCGGCAGCAT
GA

Upstream 100 bases:

>100_bases
GTTCCTCGCGGCTGCTGCGCCGCTTCCGCGACGATCTCGGGATCGCGTGCGAGCAGGGCCGGTTCGCGGAATTGGCCCGC
CAGGTGCGGAGTGAGCGCGC

Downstream 100 bases:

>100_bases
AGTTCATCTTCGCTGACAGCCTCGATTATGTGGATCCTGCATTCGACTTCATCGCCGATCGCAGCCCCGCCGAGCGCCAG
CCATATTGGGATGACGCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: DGQHR Domain Protein

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIIL
AISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFI
LVNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK
TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVR
TMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA

Sequences:

>Translated_373_residues
MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIIL
AISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFI
LVNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK
TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVR
TMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA
>Mature_372_residues
SGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIILA
ISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFIL
VNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLKT
PAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVRT
MLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40749; Mature: 40618

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHV
CCCCCEEEEEEEEHHCCCCCEEEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KEITAFLDSGPVLFPNAIILAISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAA
HHHHHHHCCCCEECCCEEEEEECCCCHHHHCCCCCCCCCEECCCCCEEEEEECCCCCEEE
WIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFILVNKARPLPTRLINELLPEV
EEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHH
SVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK
HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHC
TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGA
CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LMDTIMLRADAAPDKVAAVRTMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDH
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVHIERDLARAAA
HHHHHHHHHHHCC
>Mature Secondary Structure 
SGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHV
CCCCEEEEEEEEHHCCCCCEEEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KEITAFLDSGPVLFPNAIILAISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAA
HHHHHHHCCCCEECCCEEEEEECCCCHHHHCCCCCCCCCEECCCCCEEEEEECCCCCEEE
WIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFILVNKARPLPTRLINELLPEV
EEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHH
SVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK
HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHC
TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGA
CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LMDTIMLRADAAPDKVAAVRTMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDH
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
LVHIERDLARAAA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA