| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488125
Identifier: 103488125
GI number: 103488125
Start: 2792190
End: 2793311
Strand: Reverse
Name: 103488125
Synonym: Sala_2648
Alternate gene names: NA
Gene position: 2793311-2792190 (Counterclockwise)
Preceding gene: 103488126
Following gene: 103488124
Centisome position: 83.5
GC content: 65.6
Gene sequence:
>1122_bases ATGAGCGGACGCGAAACTCTCAAGGTCCGCGCGGTGCGCGCCGAGCAGGCCGGCGGGACCAGTGTCTTTGCGTTCTTCCT CTATGGCGCCGATATCAACCGGGTGGCGGATATCAGCCGGATCCGCCGCGACGATCAGGAGCTTAAGGGCTTCCAACGCC GCGAGATCCGCGATCACGTTAAGGAGATCACGGCCTTTCTCGACAGCGGCCCGGTGCTGTTTCCCAATGCGATCATCCTT GCCATCTCGCCCGAAGTGGAGTTCGCCTCGGCGCGTGGCCGCTCGCCGGGCAATATGTGCGAAGTGGGGGATGCGGGCAC GCTGTCGATACCGATCTATCCCGAGGGCCGGCGCGCCGCCTGGATCGTCGATGGGCAGCAGCGCTCGCTGGCGCTGAGCG CCGCCAAGGACCGAACGATCGCCGTACCGGTGGTCGGGTTCGTGTCGGATGCGCTCGAGACGCAGCGCGAGCAGTTCATC CTGGTCAACAAGGCGCGGCCGCTGCCGACCCGGCTGATCAACGAACTGCTGCCCGAGGTGAGCGTGTTGCTGCCGCGCGA TCTGGCGGCACGCCGGTTGCCGAGCGCGCTGTGCGAAGCGCTCAACACCGATCCGAATTCGCCCTTCTTCGGCCTGATCA AGCGCGAGTCCGATGCGAAGGACCGTGCCGGCATCGTCACCGACAATGCGCTCATTGAAACGATGAAGGCGAGCCTCAAG ACCCCAGCCGGGGCGCTCGGCCAATTCAAGCATAATGGTGACGGCAACGACACGGTCGCCATGTACGATGCGCTTCTCCT CTACTGGTCGGCGGTCCGCGACACCTTTCCAGAGGCCTGGGGCAAGCCACCGGCCGACAGCCGACTGATGCACTCCGCCG GCATCCGCGCGATGGGCGCGTTGATGGATACGATCATGCTGCGCGCCGATGCGGCGCCGGACAAGGTGGCGGCGGTGCGC ACGATGCTCAAGCGCATCGCGCCCTTGTGCTGCTGGACCGCCGGCACATGGGAGGGCCTCGGCCTTGCCTGGAACGAAAT CCAGTCGACCTCGCAGCACATCACCAAGCTCAGCGATCATCTGGTGCACATCGAGCGCGATCTCGCGCGGGCGGCAGCAT GA
Upstream 100 bases:
>100_bases GTTCCTCGCGGCTGCTGCGCCGCTTCCGCGACGATCTCGGGATCGCGTGCGAGCAGGGCCGGTTCGCGGAATTGGCCCGC CAGGTGCGGAGTGAGCGCGC
Downstream 100 bases:
>100_bases AGTTCATCTTCGCTGACAGCCTCGATTATGTGGATCCTGCATTCGACTTCATCGCCGATCGCAGCCCCGCCGAGCGCCAG CCATATTGGGATGACGCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: DGQHR Domain Protein
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIIL AISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFI LVNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVR TMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA
Sequences:
>Translated_373_residues MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIIL AISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFI LVNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVR TMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA >Mature_372_residues SGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHVKEITAFLDSGPVLFPNAIILA ISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAAWIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFIL VNKARPLPTRLINELLPEVSVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLKT PAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGALMDTIMLRADAAPDKVAAVRT MLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDHLVHIERDLARAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40749; Mature: 40618
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHV CCCCCEEEEEEEEHHCCCCCEEEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KEITAFLDSGPVLFPNAIILAISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAA HHHHHHHCCCCEECCCEEEEEECCCCHHHHCCCCCCCCCEECCCCCEEEEEECCCCCEEE WIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFILVNKARPLPTRLINELLPEV EEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHH SVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHC TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGA CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LMDTIMLRADAAPDKVAAVRTMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDH HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH LVHIERDLARAAA HHHHHHHHHHHCC >Mature Secondary Structure SGRETLKVRAVRAEQAGGTSVFAFFLYGADINRVADISRIRRDDQELKGFQRREIRDHV CCCCEEEEEEEEHHCCCCCEEEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH KEITAFLDSGPVLFPNAIILAISPEVEFASARGRSPGNMCEVGDAGTLSIPIYPEGRRAA HHHHHHHCCCCEECCCEEEEEECCCCHHHHCCCCCCCCCEECCCCCEEEEEECCCCCEEE WIVDGQQRSLALSAAKDRTIAVPVVGFVSDALETQREQFILVNKARPLPTRLINELLPEV EEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHH SVLLPRDLAARRLPSALCEALNTDPNSPFFGLIKRESDAKDRAGIVTDNALIETMKASLK HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHC TPAGALGQFKHNGDGNDTVAMYDALLLYWSAVRDTFPEAWGKPPADSRLMHSAGIRAMGA CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH LMDTIMLRADAAPDKVAAVRTMLKRIAPLCCWTAGTWEGLGLAWNEIQSTSQHITKLSDH HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH LVHIERDLARAAA HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA