Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488124

Identifier: 103488124

GI number: 103488124

Start: 2790862

End: 2792193

Strand: Reverse

Name: 103488124

Synonym: Sala_2647

Alternate gene names: NA

Gene position: 2792193-2790862 (Counterclockwise)

Preceding gene: 103488125

Following gene: 103488123

Centisome position: 83.47

GC content: 62.09

Gene sequence:

>1332_bases
ATGAAGTTCATCTTCGCTGACAGCCTCGATTATGTGGATCCTGCATTCGACTTCATCGCCGATCGCAGCCCCGCCGAGCG
CCAGCCATATTGGGATGACGCCTATCCGCACGAGATCCTCGGCTATGCGCCCTATGACGGGGTGCTGGTCTCGCGCGGCA
TCGTCGGCGACCACCGCGTGAAGGGCAAATATACGGCCAGCCAGGCGCGCCGCTTCCGCCTGGTTGGGGCCCGCAAGTTT
CTGCGCCTCGACAAGCCCGAGTTCGCACATCTCGACATTTTCGGCGATTGCGGCGCCTTCACTTATGTGCAGGATGAGAA
GCCGCCGTACACGCCGGTGGAAATGGCCGAATTCTACGACGAATGCGGCTTCACCCATGGCGCCTCGGTCGACCATATCA
TCTTCGATTTCGACGCCGGCCTCGCGGGGCTGGCTGGCGGGTCGACCGACGCCCGACAGCGCTTCGACATCACGCTAGAG
AACGCCGAGGGATTCCTGCGCGAGGCCAAAGTGATGGACGCGGGCTTCACCCCGATGGGCGTGATCCAGGGCTGGTCGCC
CGGCAGCATGGCCGAGGCGGCGCGTCGGCTGGTCGCCATGGGCTATGACTACCTGGCACTCGGCGGCATGGTTCCGCTCA
AGTCGCCCGAGATCAAGTTATGTTTGGAAGCGATCCGCGACACGGTGCCCGCATCGACACGCCTCCACATCCTCGGCTTT
GCCAAGGCCGACGATATCGACAGCTTCCACGGCTACGACATTTCAAGCTTCGACACGACGTCACCCCTCATTCGCGCGTT
CAAGGACGCGAAGCAGAACTATTATCTGCCGGGCGACGGGTTGGCGCTGCGCTACTTCACCTCGATCCGGGTGCCGCAGG
CGATCGAAAACCCCAAGCTCCAGCGCGCGGTCAAGAAGGGTATGTTCCGGGCCGAGGAATTGGTCCGGCTCGAGGCGTTG
GCGCTGGGCTCATTGCGCGCGTTCGACCGGGATGAAGCCGGGCTCGAAGAGACGCTGCATCACGTGCTCGTCTACAGTGC
GCCTTTGGTCGAGGAAAAGCCTTACGAGGACTGCGCCGCGAGCCCGTCGCTGGCGCGCCTGGCCGAGCGCTATCGTACGA
CGCTTGCCGAGCGGCCATGGAAGCAATGTTCCTGCAAAATCTGCCGGGATGCCGCGATCGATGTGATCATCTTTCGCGGA
AGCAATCGCAACAAGCGCCGCGGGATTCACAATCTCGCGGTCTACCAAGATCATATCGAACGACTGGATTTGAAGCGTGC
CGTTGAACCAAGTGATGACCTACCTCGCCGTCTGTGCGCAGCAGAGCAGTGA

Upstream 100 bases:

>100_bases
TCGGCCTTGCCTGGAACGAAATCCAGTCGACCTCGCAGCACATCACCAAGCTCAGCGATCATCTGGTGCACATCGAGCGC
GATCTCGCGCGGGCGGCAGC

Downstream 100 bases:

>100_bases
GCACAAAGTGCTCAGCTTCGCGGCAAAAGCCGCGGACGTGCTGCGCTTTGCGGCTATCGACCGGATCGGCCGAGACGCCC
AGGGCGAGCTCAGCGGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF
LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE
NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF
AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL
ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG
SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ

Sequences:

>Translated_443_residues
MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF
LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE
NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF
AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL
ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG
SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ
>Mature_443_residues
MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF
LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE
NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF
AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL
ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG
SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49697; Mature: 49697

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRV
CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC
KGKYTASQARRFRLVGARKFLRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYD
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH
ECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLENAEGFLREAKVMDAGFTPMG
HHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHH
VIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF
HCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEEHHCCCCHHHCCHHH
QRAVKKGMFRAEELVRLEALALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC
SPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRGSNRNKRRGIHNLAVYQDHIE
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHH
RLDLKRAVEPSDDLPRRLCAAEQ
HHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRV
CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC
KGKYTASQARRFRLVGARKFLRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYD
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH
ECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLENAEGFLREAKVMDAGFTPMG
HHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHH
VIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF
HCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEEHHCCCCHHHCCHHH
QRAVKKGMFRAEELVRLEALALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC
SPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRGSNRNKRRGIHNLAVYQDHIE
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHH
RLDLKRAVEPSDDLPRRLCAAEQ
HHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA