| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488124
Identifier: 103488124
GI number: 103488124
Start: 2790862
End: 2792193
Strand: Reverse
Name: 103488124
Synonym: Sala_2647
Alternate gene names: NA
Gene position: 2792193-2790862 (Counterclockwise)
Preceding gene: 103488125
Following gene: 103488123
Centisome position: 83.47
GC content: 62.09
Gene sequence:
>1332_bases ATGAAGTTCATCTTCGCTGACAGCCTCGATTATGTGGATCCTGCATTCGACTTCATCGCCGATCGCAGCCCCGCCGAGCG CCAGCCATATTGGGATGACGCCTATCCGCACGAGATCCTCGGCTATGCGCCCTATGACGGGGTGCTGGTCTCGCGCGGCA TCGTCGGCGACCACCGCGTGAAGGGCAAATATACGGCCAGCCAGGCGCGCCGCTTCCGCCTGGTTGGGGCCCGCAAGTTT CTGCGCCTCGACAAGCCCGAGTTCGCACATCTCGACATTTTCGGCGATTGCGGCGCCTTCACTTATGTGCAGGATGAGAA GCCGCCGTACACGCCGGTGGAAATGGCCGAATTCTACGACGAATGCGGCTTCACCCATGGCGCCTCGGTCGACCATATCA TCTTCGATTTCGACGCCGGCCTCGCGGGGCTGGCTGGCGGGTCGACCGACGCCCGACAGCGCTTCGACATCACGCTAGAG AACGCCGAGGGATTCCTGCGCGAGGCCAAAGTGATGGACGCGGGCTTCACCCCGATGGGCGTGATCCAGGGCTGGTCGCC CGGCAGCATGGCCGAGGCGGCGCGTCGGCTGGTCGCCATGGGCTATGACTACCTGGCACTCGGCGGCATGGTTCCGCTCA AGTCGCCCGAGATCAAGTTATGTTTGGAAGCGATCCGCGACACGGTGCCCGCATCGACACGCCTCCACATCCTCGGCTTT GCCAAGGCCGACGATATCGACAGCTTCCACGGCTACGACATTTCAAGCTTCGACACGACGTCACCCCTCATTCGCGCGTT CAAGGACGCGAAGCAGAACTATTATCTGCCGGGCGACGGGTTGGCGCTGCGCTACTTCACCTCGATCCGGGTGCCGCAGG CGATCGAAAACCCCAAGCTCCAGCGCGCGGTCAAGAAGGGTATGTTCCGGGCCGAGGAATTGGTCCGGCTCGAGGCGTTG GCGCTGGGCTCATTGCGCGCGTTCGACCGGGATGAAGCCGGGCTCGAAGAGACGCTGCATCACGTGCTCGTCTACAGTGC GCCTTTGGTCGAGGAAAAGCCTTACGAGGACTGCGCCGCGAGCCCGTCGCTGGCGCGCCTGGCCGAGCGCTATCGTACGA CGCTTGCCGAGCGGCCATGGAAGCAATGTTCCTGCAAAATCTGCCGGGATGCCGCGATCGATGTGATCATCTTTCGCGGA AGCAATCGCAACAAGCGCCGCGGGATTCACAATCTCGCGGTCTACCAAGATCATATCGAACGACTGGATTTGAAGCGTGC CGTTGAACCAAGTGATGACCTACCTCGCCGTCTGTGCGCAGCAGAGCAGTGA
Upstream 100 bases:
>100_bases TCGGCCTTGCCTGGAACGAAATCCAGTCGACCTCGCAGCACATCACCAAGCTCAGCGATCATCTGGTGCACATCGAGCGC GATCTCGCGCGGGCGGCAGC
Downstream 100 bases:
>100_bases GCACAAAGTGCTCAGCTTCGCGGCAAAAGCCGCGGACGTGCTGCGCTTTGCGGCTATCGACCGGATCGGCCGAGACGCCC AGGGCGAGCTCAGCGGGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ
Sequences:
>Translated_443_residues MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ >Mature_443_residues MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRVKGKYTASQARRFRLVGARKF LRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYDECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLE NAEGFLREAKVMDAGFTPMGVIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKLQRAVKKGMFRAEELVRLEAL ALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAASPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRG SNRNKRRGIHNLAVYQDHIERLDLKRAVEPSDDLPRRLCAAEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49697; Mature: 49697
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRV CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC KGKYTASQARRFRLVGARKFLRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYD CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH ECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLENAEGFLREAKVMDAGFTPMG HHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHH VIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF HCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEEHHCCCCHHHCCHHH QRAVKKGMFRAEELVRLEALALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC SPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRGSNRNKRRGIHNLAVYQDHIE CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHH RLDLKRAVEPSDDLPRRLCAAEQ HHHHHHCCCCCHHHHHHHHCCCC >Mature Secondary Structure MKFIFADSLDYVDPAFDFIADRSPAERQPYWDDAYPHEILGYAPYDGVLVSRGIVGDHRV CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCCC KGKYTASQARRFRLVGARKFLRLDKPEFAHLDIFGDCGAFTYVQDEKPPYTPVEMAEFYD CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH ECGFTHGASVDHIIFDFDAGLAGLAGGSTDARQRFDITLENAEGFLREAKVMDAGFTPMG HHCCCCCCCCCEEEEEECCCCHHCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCHH VIQGWSPGSMAEAARRLVAMGYDYLALGGMVPLKSPEIKLCLEAIRDTVPASTRLHILGF HCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE AKADDIDSFHGYDISSFDTTSPLIRAFKDAKQNYYLPGDGLALRYFTSIRVPQAIENPKL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEEHHCCCCHHHCCHHH QRAVKKGMFRAEELVRLEALALGSLRAFDRDEAGLEETLHHVLVYSAPLVEEKPYEDCAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC SPSLARLAERYRTTLAERPWKQCSCKICRDAAIDVIIFRGSNRNKRRGIHNLAVYQDHIE CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHH RLDLKRAVEPSDDLPRRLCAAEQ HHHHHHCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA