| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488123
Identifier: 103488123
GI number: 103488123
Start: 2789811
End: 2790854
Strand: Reverse
Name: 103488123
Synonym: Sala_2646
Alternate gene names: NA
Gene position: 2790854-2789811 (Counterclockwise)
Preceding gene: 103488124
Following gene: 103488122
Centisome position: 83.43
GC content: 63.89
Gene sequence:
>1044_bases GTGCTCAGCTTCGCGGCAAAAGCCGCGGACGTGCTGCGCTTTGCGGCTATCGACCGGATCGGCCGAGACGCCCAGGGCGA GCTCAGCGGGTTCCAGCGGCCGCAAGTCGCCGCCCATATCCGCGAGATCCGCGACTATCTCGAGAAGCCCGACGCAGTGT TGCCCAACCCGATCGTCGTCGCCTTTACCGATCGCGTCAGCGTTGAGGACCTCGGGAATGGCGCCGTGCAGTTGGCGATT GACATGAGCAGCAGCGTTCCCGGATTGGTGGTGGACGGCCAGCAGCGTTTGTCGGCGCTTGCCGATCTCGACCGCGACTT CCAGGTCTTCGTCTCGGCGCTGATCTGCCGCGACGAGGCGGAACTCCGCCGCCAATTCGTGCTCATCAACAATACCAAGC CGCTGCCCAAGTCGCTGATCTACGAGCTGCTGCCGACCGTCGGCGATCTGCCACCGCGGCTCAGCCGGCGGTCGGTCGCC TCCGATCTGACGGCGCGGCTCAACTTCGAGAACACCGCGCTCAAGGGCTATATCAAGCAGCATACCTGTCCCGAGGGCAT CATCGCCGACACGGTGATGCAGAAGATCATCATGGAGTCGCTCAGCAACGGGGTGATGCGCGAGCTGATCCGGGGTGCGA AGGGCGAGGAACGCTGTGTGCGGCTGATGTCAAATTTCTTCGACGCAGTGAAGAAGGTCTGGCCCGAGGCGTGGCACGGC CAGAAGCCAAATACCTCTCGCCTGCTGCACGGCGCCGGCATCCAGGCCATGGGCGACGTCATGGAAGTGCTCGCCGAGCG CGGGGAGGCGCGGACGGTCGAGGATTTCAGAACCGGGATGGAATGCCTTAAGGACAAGACCGCCTGGACCGCTGGCGAGT GGCATATGGATGGCGAGGTCCGGCGGTGGAATGGCTTGCAGAACGTCAACCGCGATGTCGCGCTGCTCAAACATTATCTG GTGGGCATCGTGAAGGCGGACCTGCGCAAGAAGGCCAAGCGGGCGCCGGCGCCGCTCCTTGAACCCACGGCCGATAGATC ATGA
Upstream 100 bases:
>100_bases GTCTACCAAGATCATATCGAACGACTGGATTTGAAGCGTGCCGTTGAACCAAGTGATGACCTACCTCGCCGTCTGTGCGC AGCAGAGCAGTGAGCACAAA
Downstream 100 bases:
>100_bases GCTACGCGGTCAAGGAGATCTTCAAGACGCTGCAGGGTGAAGGCGCCCAGATGGGGCGTGCGGCGGTGTTCTGCCGGTTC GCCGGATGCAATCTATGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: DGQHR Domain Protein
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL VGIVKADLRKKAKRAPAPLLEPTADRS
Sequences:
>Translated_347_residues MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL VGIVKADLRKKAKRAPAPLLEPTADRS >Mature_347_residues MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL VGIVKADLRKKAKRAPAPLLEPTADRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38604; Mature: 38604
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVV CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE AFTDRVSVEDLGNGAVQLAIDMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEA EEECCCCHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHCCHH ELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVASDLTARLNFENTALKGYIKQ HHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH HTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCC QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEV CCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH RRWNGLQNVNRDVALLKHYLVGIVKADLRKKAKRAPAPLLEPTADRS HHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVV CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE AFTDRVSVEDLGNGAVQLAIDMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEA EEECCCCHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHCCHH ELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVASDLTARLNFENTALKGYIKQ HHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH HTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCC QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEV CCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH RRWNGLQNVNRDVALLKHYLVGIVKADLRKKAKRAPAPLLEPTADRS HHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA