Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488123

Identifier: 103488123

GI number: 103488123

Start: 2789811

End: 2790854

Strand: Reverse

Name: 103488123

Synonym: Sala_2646

Alternate gene names: NA

Gene position: 2790854-2789811 (Counterclockwise)

Preceding gene: 103488124

Following gene: 103488122

Centisome position: 83.43

GC content: 63.89

Gene sequence:

>1044_bases
GTGCTCAGCTTCGCGGCAAAAGCCGCGGACGTGCTGCGCTTTGCGGCTATCGACCGGATCGGCCGAGACGCCCAGGGCGA
GCTCAGCGGGTTCCAGCGGCCGCAAGTCGCCGCCCATATCCGCGAGATCCGCGACTATCTCGAGAAGCCCGACGCAGTGT
TGCCCAACCCGATCGTCGTCGCCTTTACCGATCGCGTCAGCGTTGAGGACCTCGGGAATGGCGCCGTGCAGTTGGCGATT
GACATGAGCAGCAGCGTTCCCGGATTGGTGGTGGACGGCCAGCAGCGTTTGTCGGCGCTTGCCGATCTCGACCGCGACTT
CCAGGTCTTCGTCTCGGCGCTGATCTGCCGCGACGAGGCGGAACTCCGCCGCCAATTCGTGCTCATCAACAATACCAAGC
CGCTGCCCAAGTCGCTGATCTACGAGCTGCTGCCGACCGTCGGCGATCTGCCACCGCGGCTCAGCCGGCGGTCGGTCGCC
TCCGATCTGACGGCGCGGCTCAACTTCGAGAACACCGCGCTCAAGGGCTATATCAAGCAGCATACCTGTCCCGAGGGCAT
CATCGCCGACACGGTGATGCAGAAGATCATCATGGAGTCGCTCAGCAACGGGGTGATGCGCGAGCTGATCCGGGGTGCGA
AGGGCGAGGAACGCTGTGTGCGGCTGATGTCAAATTTCTTCGACGCAGTGAAGAAGGTCTGGCCCGAGGCGTGGCACGGC
CAGAAGCCAAATACCTCTCGCCTGCTGCACGGCGCCGGCATCCAGGCCATGGGCGACGTCATGGAAGTGCTCGCCGAGCG
CGGGGAGGCGCGGACGGTCGAGGATTTCAGAACCGGGATGGAATGCCTTAAGGACAAGACCGCCTGGACCGCTGGCGAGT
GGCATATGGATGGCGAGGTCCGGCGGTGGAATGGCTTGCAGAACGTCAACCGCGATGTCGCGCTGCTCAAACATTATCTG
GTGGGCATCGTGAAGGCGGACCTGCGCAAGAAGGCCAAGCGGGCGCCGGCGCCGCTCCTTGAACCCACGGCCGATAGATC
ATGA

Upstream 100 bases:

>100_bases
GTCTACCAAGATCATATCGAACGACTGGATTTGAAGCGTGCCGTTGAACCAAGTGATGACCTACCTCGCCGTCTGTGCGC
AGCAGAGCAGTGAGCACAAA

Downstream 100 bases:

>100_bases
GCTACGCGGTCAAGGAGATCTTCAAGACGCTGCAGGGTGAAGGCGCCCAGATGGGGCGTGCGGCGGTGTTCTGCCGGTTC
GCCGGATGCAATCTATGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: DGQHR Domain Protein

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI
DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA
SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG
QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL
VGIVKADLRKKAKRAPAPLLEPTADRS

Sequences:

>Translated_347_residues
MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI
DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA
SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG
QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL
VGIVKADLRKKAKRAPAPLLEPTADRS
>Mature_347_residues
MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVVAFTDRVSVEDLGNGAVQLAI
DMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEAELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVA
SDLTARLNFENTALKGYIKQHTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG
QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEVRRWNGLQNVNRDVALLKHYL
VGIVKADLRKKAKRAPAPLLEPTADRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38604; Mature: 38604

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVV
CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
AFTDRVSVEDLGNGAVQLAIDMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEA
EEECCCCHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHCCHH
ELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVASDLTARLNFENTALKGYIKQ
HHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
HTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCC
QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEV
CCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
RRWNGLQNVNRDVALLKHYLVGIVKADLRKKAKRAPAPLLEPTADRS
HHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLSFAAKAADVLRFAAIDRIGRDAQGELSGFQRPQVAAHIREIRDYLEKPDAVLPNPIVV
CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
AFTDRVSVEDLGNGAVQLAIDMSSSVPGLVVDGQQRLSALADLDRDFQVFVSALICRDEA
EEECCCCHHHCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHCCHH
ELRRQFVLINNTKPLPKSLIYELLPTVGDLPPRLSRRSVASDLTARLNFENTALKGYIKQ
HHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
HTCPEGIIADTVMQKIIMESLSNGVMRELIRGAKGEERCVRLMSNFFDAVKKVWPEAWHG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHCC
QKPNTSRLLHGAGIQAMGDVMEVLAERGEARTVEDFRTGMECLKDKTAWTAGEWHMDGEV
CCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
RRWNGLQNVNRDVALLKHYLVGIVKADLRKKAKRAPAPLLEPTADRS
HHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA