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The map label for this gene is ygcF [C]

Identifier: 103488122

GI number: 103488122

Start: 2789182

End: 2789814

Strand: Reverse

Name: ygcF [C]

Synonym: Sala_2645

Alternate gene names: 103488122

Gene position: 2789814-2789182 (Counterclockwise)

Preceding gene: 103488123

Following gene: 103488121

Centisome position: 83.4

GC content: 64.45

Gene sequence:

>633_bases
ATGAGCTACGCGGTCAAGGAGATCTTCAAGACGCTGCAGGGTGAAGGCGCCCAGATGGGGCGTGCGGCGGTGTTCTGCCG
GTTCGCCGGATGCAATCTATGGTCAGGACGCGAGGGCGACCGCACAACATCGGTCTGCACGTTCTGCGATACCGACTTTG
TCGGCATGGACGGGAGCGGCGGCGGGCGCTTCGCCGACGACCAAGCCCTAGCCGACGCGATCGAGTCCGAATGGGCTGGC
GCTCGGGCCGATCGCTACGTCGTGCTGACCGGCGGCGAGCCGCTGCTCCAGGTCGACCAGGACCTGGTCGACGCGTTGCA
CACGCGCGGTTTCGAAATCGCTATAGAGACCAATGGCACACAACCCGCGCCGCGGGGGCTCGACTGGATCTGCGTCAGCC
CCAAGGCCGATGCCGAACTGGTGCTACTTGCAGGTAATGAACTCAAGCTTGTCTACCCGCAGGAGAAGGCGGCGCCCGAG
CGGTTCGAGCATCTCGCCTTCGAGCACTTTTTCCTGCAGCCGATGGATTCGCCGACCGCCGCCGCCAATCTCGAGGCTGC
GATCACCTATTGCACCCAGAACCCGCGCTGGCGCCTCTCGCTCCAGTCGCACAAGATGATCGGGATCCGCTGA

Upstream 100 bases:

>100_bases
CGCTGCTCAAACATTATCTGGTGGGCATCGTGAAGGCGGACCTGCGCAAGAAGGCCAAGCGGGCGCCGGCGCCGCTCCTT
GAACCCACGGCCGATAGATC

Downstream 100 bases:

>100_bases
TGTTTGAGCTCAGCAAGCAATTTCGTTTCGATGCCGCCCACACGCTGGAACGGTCGATCGATACCGAATCGAGCCGCCGC
ATCCACGGCCACAGCTACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGGRFADDQALADAIESEWAG
ARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPE
RFEHLAFEHFFLQPMDSPTAAANLEAAITYCTQNPRWRLSLQSHKMIGIR

Sequences:

>Translated_210_residues
MSYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGGRFADDQALADAIESEWAG
ARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPE
RFEHLAFEHFFLQPMDSPTAAANLEAAITYCTQNPRWRLSLQSHKMIGIR
>Mature_209_residues
SYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSGGGRFADDQALADAIESEWAGA
RADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGTQPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPER
FEHLAFEHFFLQPMDSPTAAANLEAAITYCTQNPRWRLSLQSHKMIGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=239, Percent_Identity=30.1255230125523, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23006; Mature: 22875

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSG
CCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEECCCCCC
GGRFADDQALADAIESEWAGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGT
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC
QPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTA
CCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCHHCCHHHHHHHHHHHHEECCCCCCCC
AANLEAAITYCTQNPRWRLSLQSHKMIGIR
CCCCEEEEEEECCCCCEEEEECCCEEEECC
>Mature Secondary Structure 
SYAVKEIFKTLQGEGAQMGRAAVFCRFAGCNLWSGREGDRTTSVCTFCDTDFVGMDGSG
CHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEECCCCCC
GGRFADDQALADAIESEWAGARADRYVVLTGGEPLLQVDQDLVDALHTRGFEIAIETNGT
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCC
QPAPRGLDWICVSPKADAELVLLAGNELKLVYPQEKAAPERFEHLAFEHFFLQPMDSPTA
CCCCCCCEEEEECCCCCCEEEEEECCCEEEEECCHHCCHHHHHHHHHHHHEECCCCCCCC
AANLEAAITYCTQNPRWRLSLQSHKMIGIR
CCCCEEEEEEECCCCCEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]