Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488112

Identifier: 103488112

GI number: 103488112

Start: 2770462

End: 2772600

Strand: Reverse

Name: 103488112

Synonym: Sala_2635

Alternate gene names: NA

Gene position: 2772600-2770462 (Counterclockwise)

Preceding gene: 103488113

Following gene: 103488111

Centisome position: 82.88

GC content: 62.79

Gene sequence:

>2139_bases
ATGATCGGCCCGAACCTCGATGCGGCGCAGGCCGTACTGGCAGATCTCGTCGCCCTCCAGCCATGCGCGAGCGCGAGCAA
TGAAATCGCCGCATTGTGCGCGGATGTGACCCAATCGGTGATCTCCGAGACATTTCCCGGTGCGCTCGTTCCTGTCATCG
ACCGTGCCGGATCGATGCAGATCGATGTTGCGGCGCCGACCATGTCCGACTGGCGGCGGCTCAAGCCCGTCCTGCTGGCG
TTCGCCGGACCGACGCTTACCGGGTTCGACGGCGTGCCAGAGCCGTTCGCCGCTATCGATCCGATCGGTGCCCGCCTCCA
ACGTGCCGCGCCCGCTGTCACCGCGATCATGCGCTTGCCGGCCGACGATCGCGCGCGCGTTGCGGCCTTGCGCGCTGTCC
TGCGCGCGCGCGACACGCTTTCGCGCGCGCCCGAATTGCAGCGCTCGGCCCCAGTCCCGACCTCTTGGCTGCTGGCGCAG
TTCCAGGATTATCTCAACGTCGGGCGCCGCGATGCGGCCACCGGCATTCTCGACCGCCTCCGCAGCGAACTCCGCCTCGA
CGCGCTCAACGTCAAATTTCTCGAGGTCCAACTGCTTGCCGCCTTTGGGGATTGGGCGTCCATCGTCGCGCTTCCCGAAT
TTGCAAGCTTGTGCGTCGCGCGGAGAACCCCCGCCGTCACCGCGGTTCTCTTGGAAGCGTTGTATCGAACCCATATTGCT
GGACCGTTCGACGCCGAGAATGTGGCCGACACGCGCGCTGCGTTCGAGGGTTCGGCCCAGTCCTTCGTGCAGTCGATGAT
TATCACCGCTGCACCGCCAGGGTTGCGGGTGGGTGGATGGCGGCTCCTCGGTCTGGAAGCACTCTCAGATCCCGGTCGCC
AGGACCTGCTCGCCATCCTTGCCGACCCGGCGCAGGACCTGGGCTGGATCACAGAACTGTTGCCGACGCAGGCGCCGCTC
GCGCCTCAAGAGATCGGGGTTGCGCCCCCGATCGATGCCGCGCGTGAAGCGCTGGTACAGGCCGATGCGGTCGACAGCAT
CGACCTCCTTGCTGACGCAATGGCAGCGATGGCGCGGCTCAGTCCCGATGAACTGGCCTTGCTGCATGAGACCATGCCGT
TCCGGCCGATCGTGCAGGCGACTGATGAACTGGCGAATATTGCGCCGCCGAAATCCTGGATCGCCTGGCTCGATCGCGCT
GCAGATCCGGCCTTCGCCAATGCACTTGATATCGCAAGGCTGGGGAAGGATGAGTGGGAGATCGGTGCATCGGCGTGCGA
TCCGGTCGCGGTAGGTGCCTTCGTCGCAGCGCTCGAAAAGGCCCAAGGCAACAAGCTTGCCGCCGATCGCACTAGCCAGG
CCTTGCCCTATCTGGTCGCCTGGCTGCAGAGAGACGACGAATTCCCAAGGGCTGCTCTGTCGCCGATCTATGGTGGGTTA
TTGACCCTCTTTGCGCTCGGGAGTGCGCGCGGAGCAACTATCTACGAGTCGAGCCAAGTGTTGGTTGAAGGGCTTCTGGC
CTCGGGCCTTGACCAAAAGGCCTATCGCGACCTGATCGCCGATATCGATGAGATCGCCGGTGACGGCTTTGGCGTCGATA
TGATCTATTGGGTTCTGGAGCTTGTTGAGAGTTTCATGAACGCCGCCACACCCGATGCGAGTGCCCGCGAGACGTTCCTC
CATCGCATTCTTGCCCGCATCGTTCCAATCTATGGCCGACTTACCCGCATTCAGCGGATCGCGGTCAGATTGTTGTCGAG
CGAACTCGGCTGGTCGCCGCCGGTAACACCGGCAACCGATGTCGAGCCCGCGGATGATGGCTTGGCTAGCCGCCTGGCTG
GCTTGCGCATTGCCATCTATTCGCTGACCGAATCCTCAAGCCGGCAAGCCAAGGCTGTTCTGGAGGAGATCTCGCCGTCC
GTCACGGTCGATACAAATGCCGATCACGGCGGTAGCCCTCGGCTGCGCGCACTGGCGGAGAATTCCGATCTCTTCGTGAT
GACCTGGTTATCGGCAAAGCACGCAGCTACGGATTTCATCCGTGAGCATCGCGGCGGTCGAACATTGCTCTATTCGCAAG
GGAAGGGATTCTCGAGCATAGTGCGAGCTATTGAGGCCCATCTATTGAAAAAGGCATGA

Upstream 100 bases:

>100_bases
GCATTTCGATCAACGGCGAACATCTCGTACTGCGTACCGACCCGGCGGCGGTCGCCGAGCAATCGATCGAGCTTGAATCG
CGCTGGGAAAGCCAGATGAC

Downstream 100 bases:

>100_bases
TAATTTAAGTCTGACTTGTCAGGTATAGCGACTGTGGTTTTGGGCAGAATGCCGGCGACACGCGAGCCCCTCGCGGGAAT
GTGGAATGGTACCGCCCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 712; Mature: 712

Protein sequence:

>712_residues
MIGPNLDAAQAVLADLVALQPCASASNEIAALCADVTQSVISETFPGALVPVIDRAGSMQIDVAAPTMSDWRRLKPVLLA
FAGPTLTGFDGVPEPFAAIDPIGARLQRAAPAVTAIMRLPADDRARVAALRAVLRARDTLSRAPELQRSAPVPTSWLLAQ
FQDYLNVGRRDAATGILDRLRSELRLDALNVKFLEVQLLAAFGDWASIVALPEFASLCVARRTPAVTAVLLEALYRTHIA
GPFDAENVADTRAAFEGSAQSFVQSMIITAAPPGLRVGGWRLLGLEALSDPGRQDLLAILADPAQDLGWITELLPTQAPL
APQEIGVAPPIDAAREALVQADAVDSIDLLADAMAAMARLSPDELALLHETMPFRPIVQATDELANIAPPKSWIAWLDRA
ADPAFANALDIARLGKDEWEIGASACDPVAVGAFVAALEKAQGNKLAADRTSQALPYLVAWLQRDDEFPRAALSPIYGGL
LTLFALGSARGATIYESSQVLVEGLLASGLDQKAYRDLIADIDEIAGDGFGVDMIYWVLELVESFMNAATPDASARETFL
HRILARIVPIYGRLTRIQRIAVRLLSSELGWSPPVTPATDVEPADDGLASRLAGLRIAIYSLTESSSRQAKAVLEEISPS
VTVDTNADHGGSPRLRALAENSDLFVMTWLSAKHAATDFIREHRGGRTLLYSQGKGFSSIVRAIEAHLLKKA

Sequences:

>Translated_712_residues
MIGPNLDAAQAVLADLVALQPCASASNEIAALCADVTQSVISETFPGALVPVIDRAGSMQIDVAAPTMSDWRRLKPVLLA
FAGPTLTGFDGVPEPFAAIDPIGARLQRAAPAVTAIMRLPADDRARVAALRAVLRARDTLSRAPELQRSAPVPTSWLLAQ
FQDYLNVGRRDAATGILDRLRSELRLDALNVKFLEVQLLAAFGDWASIVALPEFASLCVARRTPAVTAVLLEALYRTHIA
GPFDAENVADTRAAFEGSAQSFVQSMIITAAPPGLRVGGWRLLGLEALSDPGRQDLLAILADPAQDLGWITELLPTQAPL
APQEIGVAPPIDAAREALVQADAVDSIDLLADAMAAMARLSPDELALLHETMPFRPIVQATDELANIAPPKSWIAWLDRA
ADPAFANALDIARLGKDEWEIGASACDPVAVGAFVAALEKAQGNKLAADRTSQALPYLVAWLQRDDEFPRAALSPIYGGL
LTLFALGSARGATIYESSQVLVEGLLASGLDQKAYRDLIADIDEIAGDGFGVDMIYWVLELVESFMNAATPDASARETFL
HRILARIVPIYGRLTRIQRIAVRLLSSELGWSPPVTPATDVEPADDGLASRLAGLRIAIYSLTESSSRQAKAVLEEISPS
VTVDTNADHGGSPRLRALAENSDLFVMTWLSAKHAATDFIREHRGGRTLLYSQGKGFSSIVRAIEAHLLKKA
>Mature_712_residues
MIGPNLDAAQAVLADLVALQPCASASNEIAALCADVTQSVISETFPGALVPVIDRAGSMQIDVAAPTMSDWRRLKPVLLA
FAGPTLTGFDGVPEPFAAIDPIGARLQRAAPAVTAIMRLPADDRARVAALRAVLRARDTLSRAPELQRSAPVPTSWLLAQ
FQDYLNVGRRDAATGILDRLRSELRLDALNVKFLEVQLLAAFGDWASIVALPEFASLCVARRTPAVTAVLLEALYRTHIA
GPFDAENVADTRAAFEGSAQSFVQSMIITAAPPGLRVGGWRLLGLEALSDPGRQDLLAILADPAQDLGWITELLPTQAPL
APQEIGVAPPIDAAREALVQADAVDSIDLLADAMAAMARLSPDELALLHETMPFRPIVQATDELANIAPPKSWIAWLDRA
ADPAFANALDIARLGKDEWEIGASACDPVAVGAFVAALEKAQGNKLAADRTSQALPYLVAWLQRDDEFPRAALSPIYGGL
LTLFALGSARGATIYESSQVLVEGLLASGLDQKAYRDLIADIDEIAGDGFGVDMIYWVLELVESFMNAATPDASARETFL
HRILARIVPIYGRLTRIQRIAVRLLSSELGWSPPVTPATDVEPADDGLASRLAGLRIAIYSLTESSSRQAKAVLEEISPS
VTVDTNADHGGSPRLRALAENSDLFVMTWLSAKHAATDFIREHRGGRTLLYSQGKGFSSIVRAIEAHLLKKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76079; Mature: 76079

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGPNLDAAQAVLADLVALQPCASASNEIAALCADVTQSVISETFPGALVPVIDRAGSMQ
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEE
IDVAAPTMSDWRRLKPVLLAFAGPTLTGFDGVPEPFAAIDPIGARLQRAAPAVTAIMRLP
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCC
ADDRARVAALRAVLRARDTLSRAPELQRSAPVPTSWLLAQFQDYLNVGRRDAATGILDRL
CCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RSELRLDALNVKFLEVQLLAAFGDWASIVALPEFASLCVARRTPAVTAVLLEALYRTHIA
HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GPFDAENVADTRAAFEGSAQSFVQSMIITAAPPGLRVGGWRLLGLEALSDPGRQDLLAIL
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECCEEEEEHHHHCCCCHHHHHHHH
ADPAQDLGWITELLPTQAPLAPQEIGVAPPIDAAREALVQADAVDSIDLLADAMAAMARL
HCCHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
SPDELALLHETMPFRPIVQATDELANIAPPKSWIAWLDRAADPAFANALDIARLGKDEWE
CHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHH
IGASACDPVAVGAFVAALEKAQGNKLAADRTSQALPYLVAWLQRDDEFPRAALSPIYGGL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LTLFALGSARGATIYESSQVLVEGLLASGLDQKAYRDLIADIDEIAGDGFGVDMIYWVLE
HHHHHHCCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LVESFMNAATPDASARETFLHRILARIVPIYGRLTRIQRIAVRLLSSELGWSPPVTPATD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VEPADDGLASRLAGLRIAIYSLTESSSRQAKAVLEEISPSVTVDTNADHGGSPRLRALAE
CCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHEEC
NSDLFVMTWLSAKHAATDFIREHRGGRTLLYSQGKGFSSIVRAIEAHLLKKA
CCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIGPNLDAAQAVLADLVALQPCASASNEIAALCADVTQSVISETFPGALVPVIDRAGSMQ
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEE
IDVAAPTMSDWRRLKPVLLAFAGPTLTGFDGVPEPFAAIDPIGARLQRAAPAVTAIMRLP
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCC
ADDRARVAALRAVLRARDTLSRAPELQRSAPVPTSWLLAQFQDYLNVGRRDAATGILDRL
CCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RSELRLDALNVKFLEVQLLAAFGDWASIVALPEFASLCVARRTPAVTAVLLEALYRTHIA
HHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
GPFDAENVADTRAAFEGSAQSFVQSMIITAAPPGLRVGGWRLLGLEALSDPGRQDLLAIL
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECCEEEEEHHHHCCCCHHHHHHHH
ADPAQDLGWITELLPTQAPLAPQEIGVAPPIDAAREALVQADAVDSIDLLADAMAAMARL
HCCHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
SPDELALLHETMPFRPIVQATDELANIAPPKSWIAWLDRAADPAFANALDIARLGKDEWE
CHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHH
IGASACDPVAVGAFVAALEKAQGNKLAADRTSQALPYLVAWLQRDDEFPRAALSPIYGGL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LTLFALGSARGATIYESSQVLVEGLLASGLDQKAYRDLIADIDEIAGDGFGVDMIYWVLE
HHHHHHCCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LVESFMNAATPDASARETFLHRILARIVPIYGRLTRIQRIAVRLLSSELGWSPPVTPATD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VEPADDGLASRLAGLRIAIYSLTESSSRQAKAVLEEISPSVTVDTNADHGGSPRLRALAE
CCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHEEC
NSDLFVMTWLSAKHAATDFIREHRGGRTLLYSQGKGFSSIVRAIEAHLLKKA
CCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA