| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487994
Identifier: 103487994
GI number: 103487994
Start: 2650569
End: 2651495
Strand: Reverse
Name: 103487994
Synonym: Sala_2515
Alternate gene names: NA
Gene position: 2651495-2650569 (Counterclockwise)
Preceding gene: 103487995
Following gene: 103487993
Centisome position: 79.26
GC content: 59.33
Gene sequence:
>927_bases ATGCGTACCGATCTCGATCATCTTCCGGCCAACAAGCAGCGCGAGCTCGAGCGCGTAAAGGCGATCATCTTCGAAGAATT CGAAGATGCCGTCGCGCTTTCGACGATGGGCTGGAAGAAGAAGGGCCGGATCGACAAGATCATCTTGTACGGAAGTTATG CGCGCGGAGGCTGGGTCGACGAGCCGCACACGGCGAAGGGCTATCGCTCGGACTTCGATTTGCTGATCATCGTCAACGAC AAGCGCCTCACCGACAAGATCGACTTTTGGTCCAAGCTCGAAGACCGGCTGACCCGCGAGCTTGCGATCGACAAGACGCT GCACACGCCGGTGAATTTCATCGTGCACACCCTGCAGGAGGTGAATGACGGGCTGGCGCATGGGCGCTATTTCTTCATGG ACGTCGCGCGCGACGGGATCGCACTCTACGAATATGACGACAAGGCATTGCACACGCCCAAGCCGAAGACGCCCGAGCAG GCGTTGGCGATGGCGAAGGAATATTTTGAGGAGTGGTTCCCCCTCGCCATGCAGCGGTTCGAATTGTCTGCGATGGGACG GGAGAAGGGCTACCTAAAGCCAGCCGCTTTCGATCTGCACCAATCTTCCGAATTTCTGTACCACTGCGTCTTGCTGGTCT GCACCTTCTACACCCCGCATGTGCACAACCTCGGGTTCCTGCGAACGCAGGCGGAACGGATCGACATGCGGTTGGTGGAC GCATGGCCCCGCGCGTTGAAGGCCGATCGCTCACGCTTCGAGAAGCTGAAAGAGGCTTATGTGAAGGCCCGCTACTCGAA ACATTATCGCATCGGCGAAGCGGACCTGCTGTGGCTCGCTGCGCATGTCGAGGAGCTCGGCCGCGCGGTGCATGCGATCT GTTCGGAGCGCATCGCCGAACTGGAGGCCCGTATTCCGACGGCCTGA
Upstream 100 bases:
>100_bases CCGTGTGGGATTTCCGCATCCGCGAAGCGCCATGAGGTTTCGATCTGGACCCGACCATGCTTGCCATCGGGCGAGCTTGT GACCACAGAAGGAAGGAACG
Downstream 100 bases:
>100_bases TGTGCAGTGGCGGCCTTGGCAGGGCCTTTGGGCGTGCCTTCCTTTGTCCGGATGATGTCGGGGTGGAAGGGTCCTATTTC GTGTTGCGCTGCAACGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Nucleotidyltransferase Protein; DNA Polymerase Beta Domain Protein Region; HEPN Domain-Containing Protein; Hepn Domain Protein; Nucleotidyltransferase/HEPN Domain-Containing Protein; Xin-Antitoxin System Toxin Component; HEPN Domain Protein; DNA Polymerase Beta Subunit; Nucleotidyltransferase Domain-Containing Protein
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA
Sequences:
>Translated_308_residues MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA >Mature_308_residues MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA
Specific function: Unknown
COG id: COG1708
COG function: function code R; Predicted nucleotidyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35845; Mature: 35845
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: PS50910 HEPN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC EPHTAKGYRSDFDLLIIVNDKRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQE CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQALAMAKEYFEEWFPLAMQRF HHHHHHCCHHEEEEHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LEARIPTA HHHCCCCC >Mature Secondary Structure MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC EPHTAKGYRSDFDLLIIVNDKRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQE CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQALAMAKEYFEEWFPLAMQRF HHHHHHCCHHEEEEHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LEARIPTA HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA