Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487994

Identifier: 103487994

GI number: 103487994

Start: 2650569

End: 2651495

Strand: Reverse

Name: 103487994

Synonym: Sala_2515

Alternate gene names: NA

Gene position: 2651495-2650569 (Counterclockwise)

Preceding gene: 103487995

Following gene: 103487993

Centisome position: 79.26

GC content: 59.33

Gene sequence:

>927_bases
ATGCGTACCGATCTCGATCATCTTCCGGCCAACAAGCAGCGCGAGCTCGAGCGCGTAAAGGCGATCATCTTCGAAGAATT
CGAAGATGCCGTCGCGCTTTCGACGATGGGCTGGAAGAAGAAGGGCCGGATCGACAAGATCATCTTGTACGGAAGTTATG
CGCGCGGAGGCTGGGTCGACGAGCCGCACACGGCGAAGGGCTATCGCTCGGACTTCGATTTGCTGATCATCGTCAACGAC
AAGCGCCTCACCGACAAGATCGACTTTTGGTCCAAGCTCGAAGACCGGCTGACCCGCGAGCTTGCGATCGACAAGACGCT
GCACACGCCGGTGAATTTCATCGTGCACACCCTGCAGGAGGTGAATGACGGGCTGGCGCATGGGCGCTATTTCTTCATGG
ACGTCGCGCGCGACGGGATCGCACTCTACGAATATGACGACAAGGCATTGCACACGCCCAAGCCGAAGACGCCCGAGCAG
GCGTTGGCGATGGCGAAGGAATATTTTGAGGAGTGGTTCCCCCTCGCCATGCAGCGGTTCGAATTGTCTGCGATGGGACG
GGAGAAGGGCTACCTAAAGCCAGCCGCTTTCGATCTGCACCAATCTTCCGAATTTCTGTACCACTGCGTCTTGCTGGTCT
GCACCTTCTACACCCCGCATGTGCACAACCTCGGGTTCCTGCGAACGCAGGCGGAACGGATCGACATGCGGTTGGTGGAC
GCATGGCCCCGCGCGTTGAAGGCCGATCGCTCACGCTTCGAGAAGCTGAAAGAGGCTTATGTGAAGGCCCGCTACTCGAA
ACATTATCGCATCGGCGAAGCGGACCTGCTGTGGCTCGCTGCGCATGTCGAGGAGCTCGGCCGCGCGGTGCATGCGATCT
GTTCGGAGCGCATCGCCGAACTGGAGGCCCGTATTCCGACGGCCTGA

Upstream 100 bases:

>100_bases
CCGTGTGGGATTTCCGCATCCGCGAAGCGCCATGAGGTTTCGATCTGGACCCGACCATGCTTGCCATCGGGCGAGCTTGT
GACCACAGAAGGAAGGAACG

Downstream 100 bases:

>100_bases
TGTGCAGTGGCGGCCTTGGCAGGGCCTTTGGGCGTGCCTTCCTTTGTCCGGATGATGTCGGGGTGGAAGGGTCCTATTTC
GTGTTGCGCTGCAACGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Nucleotidyltransferase Protein; DNA Polymerase Beta Domain Protein Region; HEPN Domain-Containing Protein; Hepn Domain Protein; Nucleotidyltransferase/HEPN Domain-Containing Protein; Xin-Antitoxin System Toxin Component; HEPN Domain Protein; DNA Polymerase Beta Subunit; Nucleotidyltransferase Domain-Containing Protein

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND
KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ
ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD
AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA

Sequences:

>Translated_308_residues
MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND
KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ
ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD
AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA
>Mature_308_residues
MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVDEPHTAKGYRSDFDLLIIVND
KRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQEVNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQ
ALAMAKEYFEEWFPLAMQRFELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD
AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAELEARIPTA

Specific function: Unknown

COG id: COG1708

COG function: function code R; Predicted nucleotidyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35845; Mature: 35845

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50910 HEPN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC
EPHTAKGYRSDFDLLIIVNDKRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQE
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQALAMAKEYFEEWFPLAMQRF
HHHHHHCCHHEEEEHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD
HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEARIPTA
HHHCCCCC
>Mature Secondary Structure
MRTDLDHLPANKQRELERVKAIIFEEFEDAVALSTMGWKKKGRIDKIILYGSYARGGWVD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC
EPHTAKGYRSDFDLLIIVNDKRLTDKIDFWSKLEDRLTRELAIDKTLHTPVNFIVHTLQE
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNDGLAHGRYFFMDVARDGIALYEYDDKALHTPKPKTPEQALAMAKEYFEEWFPLAMQRF
HHHHHHCCHHEEEEHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELSAMGREKGYLKPAAFDLHQSSEFLYHCVLLVCTFYTPHVHNLGFLRTQAERIDMRLVD
HHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AWPRALKADRSRFEKLKEAYVKARYSKHYRIGEADLLWLAAHVEELGRAVHAICSERIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEARIPTA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA