| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487993
Identifier: 103487993
GI number: 103487993
Start: 2649428
End: 2650342
Strand: Reverse
Name: 103487993
Synonym: Sala_2514
Alternate gene names: NA
Gene position: 2650342-2649428 (Counterclockwise)
Preceding gene: 103487994
Following gene: 103487988
Centisome position: 79.23
GC content: 60.11
Gene sequence:
>915_bases ATGTCACGCGCCTATTCCAAACCGACTCTCACTTACACCCAGCAAATCGCTCATCTCCGGGCAAACGGCATGATCGTTGC CGACGAGCCGGCGGCCGAGGCGTGGCTCCGTCATGTGAGCTACTACCGGCTGAGTGCCTACTGGCTTTATTTCGAACATC CGAAGGGACAGGCGGGACCGCGCTTCCTTCCGGGCACGACATTCGAACGCGTCACCGCCCTCTATGATTTCGACCGGCTA CTCCGGCGCCTCTTGATGCGCGGCACCGAGCATGTCGAAGTGGCCTTGCGCGGGAGTTGGGCTTATCATCTCGCCGGGCT CGGCGACGGACACAGCTATCTGGACGCCAGTCTTTATAGCGATCGCACCGATTATCATCTTCGCCTCTCGAAACTGGCTG GCGAAGTGGGGCGTTCGAACGAGACCTATATCAAGCATTATCGGCAAAACTACGATCTGCCAGCATTGCCGCCGGTCTGG ATGGTCGCAGAAATGATGTCATTCGGTCACCTCTCGCGCTGGTATTCGAGCCTCGCAGACCGCGCTCTTCGAACACGCAT CGCCGGGCCCCTTGGTCTTCCGGAGACCGTTCTCGTGCCCTTGGTCCGCCATGTGACGGACATCCGTAATATCTGCGCGC ATCACGGCCGGCTGTGGAACCGGGGCTTCCTCACGCCTCCGAAGCTCGCGCAAAAGCCCAAATCCCTACAGGCGACCATC GATCAGAACGCCACTCAGGCACCCGCCAAGCTTTACAACGGCATCTGCATGATCGGTCACGTCATCAATACCGTGGCGCC GGACTCGACCTGGCTTGCCGATGTGGCGGCGCACATCGTGACCCATCCCGAGGGCGATACGCGATCGATGGGTTTTCCCG CGAACTGGCAGCAGCGGCCACTTTGGCAAGTTTGA
Upstream 100 bases:
>100_bases TATGTGGGCATCAATCGCACCCGCCCGGCCTCTGTCCGCAAGGATATGCACACTGGGCGGGTCTTTTATTTTGGGCGCCG TTGACGCATGACGATGGTCA
Downstream 100 bases:
>100_bases TTGGCAAGACGACTGGTCGGCTTTGCGCCTGAGCCCGGCCATTCACCGCCAGCGACGCGTGGCCCAAAACCAGTCGTTCG CAAATGGGCCATTATAGCAG
Product: Abi-like protein
Products: NA
Alternate protein names: Abortive Infection Bacteriophage Resistance Protein; Abi-Like Protein; Phage AbiD Protein; AbiF-Like Protein; Abi-Like Family Protein; Abortive Infection Bacteriophage Resistance Protein Abi; Phage Resistance Protein; Ypothetical Protein SMU.; AbiD Phage Protein-Like; Abi-Like Family; Abortive Infection Phage Resistance Protein; Abi-Like; Phage-Related Protein
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSRAYSKPTLTYTQQIAHLRANGMIVADEPAAEAWLRHVSYYRLSAYWLYFEHPKGQAGPRFLPGTTFERVTALYDFDRL LRRLLMRGTEHVEVALRGSWAYHLAGLGDGHSYLDASLYSDRTDYHLRLSKLAGEVGRSNETYIKHYRQNYDLPALPPVW MVAEMMSFGHLSRWYSSLADRALRTRIAGPLGLPETVLVPLVRHVTDIRNICAHHGRLWNRGFLTPPKLAQKPKSLQATI DQNATQAPAKLYNGICMIGHVINTVAPDSTWLADVAAHIVTHPEGDTRSMGFPANWQQRPLWQV
Sequences:
>Translated_304_residues MSRAYSKPTLTYTQQIAHLRANGMIVADEPAAEAWLRHVSYYRLSAYWLYFEHPKGQAGPRFLPGTTFERVTALYDFDRL LRRLLMRGTEHVEVALRGSWAYHLAGLGDGHSYLDASLYSDRTDYHLRLSKLAGEVGRSNETYIKHYRQNYDLPALPPVW MVAEMMSFGHLSRWYSSLADRALRTRIAGPLGLPETVLVPLVRHVTDIRNICAHHGRLWNRGFLTPPKLAQKPKSLQATI DQNATQAPAKLYNGICMIGHVINTVAPDSTWLADVAAHIVTHPEGDTRSMGFPANWQQRPLWQV >Mature_303_residues SRAYSKPTLTYTQQIAHLRANGMIVADEPAAEAWLRHVSYYRLSAYWLYFEHPKGQAGPRFLPGTTFERVTALYDFDRLL RRLLMRGTEHVEVALRGSWAYHLAGLGDGHSYLDASLYSDRTDYHLRLSKLAGEVGRSNETYIKHYRQNYDLPALPPVWM VAEMMSFGHLSRWYSSLADRALRTRIAGPLGLPETVLVPLVRHVTDIRNICAHHGRLWNRGFLTPPKLAQKPKSLQATID QNATQAPAKLYNGICMIGHVINTVAPDSTWLADVAAHIVTHPEGDTRSMGFPANWQQRPLWQV
Specific function: Unknown
COG id: COG4823
COG function: function code V; Abortive infection bacteriophage resistance protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34528; Mature: 34397
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAYSKPTLTYTQQIAHLRANGMIVADEPAAEAWLRHVSYYRLSAYWLYFEHPKGQAGP CCCCCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCC RFLPGTTFERVTALYDFDRLLRRLLMRGTEHVEVALRGSWAYHLAGLGDGHSYLDASLYS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHC DRTDYHLRLSKLAGEVGRSNETYIKHYRQNYDLPALPPVWMVAEMMSFGHLSRWYSSLAD CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RALRTRIAGPLGLPETVLVPLVRHVTDIRNICAHHGRLWNRGFLTPPKLAQKPKSLQATI HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHH DQNATQAPAKLYNGICMIGHVINTVAPDSTWLADVAAHIVTHPEGDTRSMGFPANWQQRP CCCCCCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC LWQV CCCC >Mature Secondary Structure SRAYSKPTLTYTQQIAHLRANGMIVADEPAAEAWLRHVSYYRLSAYWLYFEHPKGQAGP CCCCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCC RFLPGTTFERVTALYDFDRLLRRLLMRGTEHVEVALRGSWAYHLAGLGDGHSYLDASLYS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHC DRTDYHLRLSKLAGEVGRSNETYIKHYRQNYDLPALPPVWMVAEMMSFGHLSRWYSSLAD CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RALRTRIAGPLGLPETVLVPLVRHVTDIRNICAHHGRLWNRGFLTPPKLAQKPKSLQATI HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHH DQNATQAPAKLYNGICMIGHVINTVAPDSTWLADVAAHIVTHPEGDTRSMGFPANWQQRP CCCCCCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC LWQV CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA