Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is ywrD [H]
Identifier: 103487465
GI number: 103487465
Start: 2089932
End: 2091629
Strand: Direct
Name: ywrD [H]
Synonym: Sala_1982
Alternate gene names: 103487465
Gene position: 2089932-2091629 (Clockwise)
Preceding gene: 103487464
Following gene: 103487466
Centisome position: 62.48
GC content: 66.55
Gene sequence:
>1698_bases GTGCGCCCCGACGTCCATGCCGGCGACCGCCCGGTCGGTGCGAGCTTTGCGTCGCGCACCGCCGTTTATGGCCTCAGCGG CGCGGTGGGCACCGCGCACCCGCTCGCGACGCAGGCGGGGATCGACATGCTGAGGCGCGGCGGGTCGGCGGTCGACGCCG CGATCGCAATCAATGCGTGCCTCGGCCTGCTCGAACCCACCGCGAACGGCATCGGCGGCGACGTCTATGCGATGATATGG GATCCCAGGACAAAGAAGCTGGCGGGGCTGGCCGGGTCGGGGAAAAGCCCGCGCGGGCTGGATCTCGCGACGGTTCGGTC GCGCGCGCGCGGCGGCACCCTGCCCGCCTATGGCGCGATTACCGTGTCGGTTCCCGGCACGGTCGACGGCTGGTGGACGA TGCACCAGCGCTACGGCAAGCTGCCGTGGAAGGAACTGTTCGAGCCCGTCATCGCGCACGCCGAGGTGGGCGCGCCCGTG CCCGACATGATCGCCTATTATATGCGGCGCAGCCTTGCCGGATTCCGCCAGCCGGGCCGCGGGATCGAAGAGATCGACAA TGCGCTGCGCACCTGGGGCCTGAACGACGGCAAGGGACCGATGGCGGGGCAGGTGTTCCGTAACCCCGACCTTGCGCGCA CCTTCCGCCTGATTGCCGAAGGCGGGCGCGACGCCTTTTACGAGGGTGAAATCGCGCGGACGATCGATGCCTATTTCAAA CGGATCGGCGGCTGGCTGCGCTACGAGGATCTGGCCGCGCATCGATCCGAATGGATCGAGCCGCACAAGACCGCCTATCG CGGCACCGACGTTTATGCGCTGGGCGCCAACACCCAGGGCATCGCGACCTTGCAGATGCTCAATATCCTCGAACATTTCG ACCTGAAGGGCGCGGGATTCCAGTCGGCGCTGTCGATTCACCTGCAGGCGGAGGCGAAGCGCCTCGCCTATGAAGACCGC GCGCGCTATTATGCCGATCCGCACTTTGCCAGGGTGCCGGTCGAATGGCTGATTTCAAAGGACTATGCCGCCGAACGCGC AAAGCTGATCCGCCCCGACCGCCTGCTCACCCCCGTCCATCCGGGGCAAGCGCCGAGCCATGGCGACACGACCTATTTCA GCTGCGCCGACAAGGACGGGATGATGGTGTCGATGATCCAGTCGAACTTCCGCGGCATGGGGTCGGGGCTGGTTGCCGAC GGCCTCGGCTTCATGTTCCAGGACCGTGGGCAATTGTTCAGCCTTCAGGATGGGCATCCGAACATCTACGCGCCCGGAAA GCGGCCGTTCCAGACGATCATCCCCGGCTTTGCAGCGCGCGGCGACGTGCCGTGGATGAGTTTCGGCGTGATGGGCGGCG ACATGCAGCCACAAGGACAGACGCAGATCATCGTGGGCCGCGTCGATTACGGGCTCGAAATCCAGTCGGCGGGCGACTCG CCGCGCTGGCATCACGAGGGATCGTCCGAAACGATGGGCGAGGATGCGGCGGGCCTTGGCCCGAACGGCCTCTTGCGGCT CGAAAGCGGCGTGCCCGATGCAAGTCGGCGACGGCTGGCCGAGATCGGCTGGACGCTGGGCGAATCCGATGGCGGGTTCG GACGCTATCAATGCGTCGAACATCGGATGGACGGCGATACGCGCGTTTACGCCGCGGCGAGCGAAATGCGCGCCGACGGA TGTGCGCTCGCCTATTGA
Upstream 100 bases:
>100_bases AGCTGGCTTCGCGGAGGGCAGAAAGCCCAAGGCCGCGCCCGCGGCCGCCAGGCCGGACAAGACCACTCCGCCGGTGTGGG AATCGGGTGCCGACCGGTTC
Downstream 100 bases:
>100_bases AACTGGCGGGCGGAAACCCGCTCGTTTCGGCGCGGCCTCACCTCCCCCCTCCGCCAAAATTATCGAACACGATATACGAA TATTTACCTTCTTCCTTTAG
Product: gamma-glutamyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MRPDVHAGDRPVGASFASRTAVYGLSGAVGTAHPLATQAGIDMLRRGGSAVDAAIAINACLGLLEPTANGIGGDVYAMIW DPRTKKLAGLAGSGKSPRGLDLATVRSRARGGTLPAYGAITVSVPGTVDGWWTMHQRYGKLPWKELFEPVIAHAEVGAPV PDMIAYYMRRSLAGFRQPGRGIEEIDNALRTWGLNDGKGPMAGQVFRNPDLARTFRLIAEGGRDAFYEGEIARTIDAYFK RIGGWLRYEDLAAHRSEWIEPHKTAYRGTDVYALGANTQGIATLQMLNILEHFDLKGAGFQSALSIHLQAEAKRLAYEDR ARYYADPHFARVPVEWLISKDYAAERAKLIRPDRLLTPVHPGQAPSHGDTTYFSCADKDGMMVSMIQSNFRGMGSGLVAD GLGFMFQDRGQLFSLQDGHPNIYAPGKRPFQTIIPGFAARGDVPWMSFGVMGGDMQPQGQTQIIVGRVDYGLEIQSAGDS PRWHHEGSSETMGEDAAGLGPNGLLRLESGVPDASRRRLAEIGWTLGESDGGFGRYQCVEHRMDGDTRVYAAASEMRADG CALAY
Sequences:
>Translated_565_residues MRPDVHAGDRPVGASFASRTAVYGLSGAVGTAHPLATQAGIDMLRRGGSAVDAAIAINACLGLLEPTANGIGGDVYAMIW DPRTKKLAGLAGSGKSPRGLDLATVRSRARGGTLPAYGAITVSVPGTVDGWWTMHQRYGKLPWKELFEPVIAHAEVGAPV PDMIAYYMRRSLAGFRQPGRGIEEIDNALRTWGLNDGKGPMAGQVFRNPDLARTFRLIAEGGRDAFYEGEIARTIDAYFK RIGGWLRYEDLAAHRSEWIEPHKTAYRGTDVYALGANTQGIATLQMLNILEHFDLKGAGFQSALSIHLQAEAKRLAYEDR ARYYADPHFARVPVEWLISKDYAAERAKLIRPDRLLTPVHPGQAPSHGDTTYFSCADKDGMMVSMIQSNFRGMGSGLVAD GLGFMFQDRGQLFSLQDGHPNIYAPGKRPFQTIIPGFAARGDVPWMSFGVMGGDMQPQGQTQIIVGRVDYGLEIQSAGDS PRWHHEGSSETMGEDAAGLGPNGLLRLESGVPDASRRRLAEIGWTLGESDGGFGRYQCVEHRMDGDTRVYAAASEMRADG CALAY >Mature_565_residues MRPDVHAGDRPVGASFASRTAVYGLSGAVGTAHPLATQAGIDMLRRGGSAVDAAIAINACLGLLEPTANGIGGDVYAMIW DPRTKKLAGLAGSGKSPRGLDLATVRSRARGGTLPAYGAITVSVPGTVDGWWTMHQRYGKLPWKELFEPVIAHAEVGAPV PDMIAYYMRRSLAGFRQPGRGIEEIDNALRTWGLNDGKGPMAGQVFRNPDLARTFRLIAEGGRDAFYEGEIARTIDAYFK RIGGWLRYEDLAAHRSEWIEPHKTAYRGTDVYALGANTQGIATLQMLNILEHFDLKGAGFQSALSIHLQAEAKRLAYEDR ARYYADPHFARVPVEWLISKDYAAERAKLIRPDRLLTPVHPGQAPSHGDTTYFSCADKDGMMVSMIQSNFRGMGSGLVAD GLGFMFQDRGQLFSLQDGHPNIYAPGKRPFQTIIPGFAARGDVPWMSFGVMGGDMQPQGQTQIIVGRVDYGLEIQSAGDS PRWHHEGSSETMGEDAAGLGPNGLLRLESGVPDASRRRLAEIGWTLGESDGGFGRYQCVEHRMDGDTRVYAAASEMRADG CALAY
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI73915092, Length=484, Percent_Identity=29.3388429752066, Blast_Score=158, Evalue=2e-38, Organism=Homo sapiens, GI73915090, Length=484, Percent_Identity=29.3388429752066, Blast_Score=158, Evalue=2e-38, Organism=Homo sapiens, GI73915096, Length=484, Percent_Identity=29.3388429752066, Blast_Score=158, Evalue=2e-38, Organism=Homo sapiens, GI73915094, Length=484, Percent_Identity=29.3388429752066, Blast_Score=158, Evalue=2e-38, Organism=Homo sapiens, GI113429324, Length=470, Percent_Identity=28.7234042553192, Blast_Score=146, Evalue=4e-35, Organism=Homo sapiens, GI113429326, Length=475, Percent_Identity=28.2105263157895, Blast_Score=142, Evalue=1e-33, Organism=Homo sapiens, GI109148539, Length=492, Percent_Identity=26.6260162601626, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI153266901, Length=485, Percent_Identity=23.7113402061856, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI153266885, Length=486, Percent_Identity=23.0452674897119, Blast_Score=86, Evalue=6e-17, Organism=Escherichia coli, GI1789856, Length=506, Percent_Identity=30.8300395256917, Blast_Score=224, Evalue=9e-60, Organism=Caenorhabditis elegans, GI193208245, Length=524, Percent_Identity=24.618320610687, Blast_Score=125, Evalue=8e-29, Organism=Caenorhabditis elegans, GI193208247, Length=508, Percent_Identity=24.6062992125984, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI72000294, Length=553, Percent_Identity=23.6889692585895, Blast_Score=115, Evalue=6e-26, Organism=Caenorhabditis elegans, GI212646519, Length=553, Percent_Identity=23.869801084991, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17506189, Length=492, Percent_Identity=24.390243902439, Blast_Score=112, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17542894, Length=501, Percent_Identity=26.5469061876248, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI161077880, Length=480, Percent_Identity=26.0416666666667, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI161077878, Length=480, Percent_Identity=26.0416666666667, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI18859893, Length=500, Percent_Identity=28.2, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI45551474, Length=480, Percent_Identity=26.0416666666667, Blast_Score=127, Evalue=3e-29, Organism=Drosophila melanogaster, GI24642670, Length=480, Percent_Identity=26.0416666666667, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI24642666, Length=480, Percent_Identity=26.0416666666667, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI161077496, Length=489, Percent_Identity=27.19836400818, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI18859741, Length=485, Percent_Identity=23.2989690721649, Blast_Score=85, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 61278; Mature: 61278
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPDVHAGDRPVGASFASRTAVYGLSGAVGTAHPLATQAGIDMLRRGGSAVDAAIAINAC CCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH LGLLEPTANGIGGDVYAMIWDPRTKKLAGLAGSGKSPRGLDLATVRSRARGGTLPAYGAI HHHHCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE TVSVPGTVDGWWTMHQRYGKLPWKELFEPVIAHAEVGAPVPDMIAYYMRRSLAGFRQPGR EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GIEEIDNALRTWGLNDGKGPMAGQVFRNPDLARTFRLIAEGGRDAFYEGEIARTIDAYFK CHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHH RIGGWLRYEDLAAHRSEWIEPHKTAYRGTDVYALGANTQGIATLQMLNILEHFDLKGAGF HHCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC QSALSIHLQAEAKRLAYEDRARYYADPHFARVPVEWLISKDYAAERAKLIRPDRLLTPVH CCEEEEEEEHHHHHHHHHHHHHHCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCC PGQAPSHGDTTYFSCADKDGMMVSMIQSNFRGMGSGLVADGLGFMFQDRGQLFSLQDGHP CCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCHHEECCCCEEEEECCCC NIYAPGKRPFQTIIPGFAARGDVPWMSFGVMGGDMQPQGQTQIIVGRVDYGLEIQSAGDS CEECCCCCCHHHHCCCHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCEEEECCCCC PRWHHEGSSETMGEDAAGLGPNGLLRLESGVPDASRRRLAEIGWTLGESDGGFGRYQCVE CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCEECCCCCCCCHHHHHH HRMDGDTRVYAAASEMRADGCALAY HHCCCCCEEEEEHHHHCCCCCCCCC >Mature Secondary Structure MRPDVHAGDRPVGASFASRTAVYGLSGAVGTAHPLATQAGIDMLRRGGSAVDAAIAINAC CCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH LGLLEPTANGIGGDVYAMIWDPRTKKLAGLAGSGKSPRGLDLATVRSRARGGTLPAYGAI HHHHCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE TVSVPGTVDGWWTMHQRYGKLPWKELFEPVIAHAEVGAPVPDMIAYYMRRSLAGFRQPGR EEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GIEEIDNALRTWGLNDGKGPMAGQVFRNPDLARTFRLIAEGGRDAFYEGEIARTIDAYFK CHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHH RIGGWLRYEDLAAHRSEWIEPHKTAYRGTDVYALGANTQGIATLQMLNILEHFDLKGAGF HHCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC QSALSIHLQAEAKRLAYEDRARYYADPHFARVPVEWLISKDYAAERAKLIRPDRLLTPVH CCEEEEEEEHHHHHHHHHHHHHHCCCCCCEECCHHHHHCCHHHHHHHHHCCCCCCCCCCC PGQAPSHGDTTYFSCADKDGMMVSMIQSNFRGMGSGLVADGLGFMFQDRGQLFSLQDGHP CCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCHHEECCCCEEEEECCCC NIYAPGKRPFQTIIPGFAARGDVPWMSFGVMGGDMQPQGQTQIIVGRVDYGLEIQSAGDS CEECCCCCCHHHHCCCHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCEEEECCCCC PRWHHEGSSETMGEDAAGLGPNGLLRLESGVPDASRRRLAEIGWTLGESDGGFGRYQCVE CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCEECCCCCCCCHHHHHH HRMDGDTRVYAAASEMRADGCALAY HHCCCCCEEEEEHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]