Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487454
Identifier: 103487454
GI number: 103487454
Start: 2078459
End: 2079094
Strand: Direct
Name: 103487454
Synonym: Sala_1970
Alternate gene names: NA
Gene position: 2078459-2079094 (Clockwise)
Preceding gene: 103487452
Following gene: 103487458
Centisome position: 62.13
GC content: 69.81
Gene sequence:
>636_bases TTGGGAATCGTCGAGATTTTGGGTGTCGCGGGCAGCCTGAGCCTGCTCGCCGGATGGCGGCTCTACCTCACCATCCTGGC GACCGGGGTCGCGATGCATTTCGGCTGGCTGCCGCTCCCCGAACATCTGGCGGCGCTGCAGGTGCTCGCAAACCCGTGGG TGCTCGGCGTCGCCGCGGTCGGCACGATCGCGGAGTTCCTGGCCGACAAGATCGCCTGGGTCGATTCAGCATGGGACACG GTCCACAGTATCATCCGCCCGCTGGGCGGCGCGCTGCTCGCGCTCGCGCTGGTCGACGCTTCGGACCCGGCGTGGCAGGT GATCGCCTTCCTGCTGGGCGGCGGCGGCGCGCTGCTGAGCCACGGCGCCAAGGCGACGACGCGCGCGGTCGTCAACGTCA GCCCCGAACCGGTGAGCAACGCGGTCGTGTCGACCGGCGAGGATGTCGCGACGGGCGGCCTGCTTGCGCTCGCCATTGCT TTTCCGCCGTTCGCAATCGTCATCGCAATCCTGCTCGCCGCCGGCGCGGCAATGGTCATCGTCGCGCTGCGCCGCCTGCT CCGCAACGTCAAGGCGACGCTCAGGAAGGCGATGGGCGACGAACCGCCCCGCACAGACCCACTGCCGCCGACCTGA
Upstream 100 bases:
>100_bases ATAACCGCGCCACGCCCACTTGTCATCCCGCCATTGCGGCTGCCCGGCCAAGGGTGCAAGATGCGGCCCGGCGCAACACC ATGGGCGGGGGAGCGGGCCA
Downstream 100 bases:
>100_bases GGATCAGGCCGGCAACAGCGCCTTCAGCGGGGTTCCGGTATCGGCAAGCTGCTCCGCCGTGGCGCGAAGCCCGGCGGTGA CGATCATCCGCCCCTGGACA
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDT VHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIA FPPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT
Sequences:
>Translated_211_residues MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDT VHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIA FPPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT >Mature_210_residues GIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDTV HSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAF PPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21691; Mature: 21560
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH GTIAEFLADKIAWVDSAWDTVHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH HGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAFPPFAIVIAILLAAGAAMVI CCCHHHHHHEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VALRRLLRNVKATLRKAMGDEPPRTDPLPPT HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure GIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH GTIAEFLADKIAWVDSAWDTVHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH HGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAFPPFAIVIAILLAAGAAMVI CCCHHHHHHEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH VALRRLLRNVKATLRKAMGDEPPRTDPLPPT HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA