Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487454

Identifier: 103487454

GI number: 103487454

Start: 2078459

End: 2079094

Strand: Direct

Name: 103487454

Synonym: Sala_1970

Alternate gene names: NA

Gene position: 2078459-2079094 (Clockwise)

Preceding gene: 103487452

Following gene: 103487458

Centisome position: 62.13

GC content: 69.81

Gene sequence:

>636_bases
TTGGGAATCGTCGAGATTTTGGGTGTCGCGGGCAGCCTGAGCCTGCTCGCCGGATGGCGGCTCTACCTCACCATCCTGGC
GACCGGGGTCGCGATGCATTTCGGCTGGCTGCCGCTCCCCGAACATCTGGCGGCGCTGCAGGTGCTCGCAAACCCGTGGG
TGCTCGGCGTCGCCGCGGTCGGCACGATCGCGGAGTTCCTGGCCGACAAGATCGCCTGGGTCGATTCAGCATGGGACACG
GTCCACAGTATCATCCGCCCGCTGGGCGGCGCGCTGCTCGCGCTCGCGCTGGTCGACGCTTCGGACCCGGCGTGGCAGGT
GATCGCCTTCCTGCTGGGCGGCGGCGGCGCGCTGCTGAGCCACGGCGCCAAGGCGACGACGCGCGCGGTCGTCAACGTCA
GCCCCGAACCGGTGAGCAACGCGGTCGTGTCGACCGGCGAGGATGTCGCGACGGGCGGCCTGCTTGCGCTCGCCATTGCT
TTTCCGCCGTTCGCAATCGTCATCGCAATCCTGCTCGCCGCCGGCGCGGCAATGGTCATCGTCGCGCTGCGCCGCCTGCT
CCGCAACGTCAAGGCGACGCTCAGGAAGGCGATGGGCGACGAACCGCCCCGCACAGACCCACTGCCGCCGACCTGA

Upstream 100 bases:

>100_bases
ATAACCGCGCCACGCCCACTTGTCATCCCGCCATTGCGGCTGCCCGGCCAAGGGTGCAAGATGCGGCCCGGCGCAACACC
ATGGGCGGGGGAGCGGGCCA

Downstream 100 bases:

>100_bases
GGATCAGGCCGGCAACAGCGCCTTCAGCGGGGTTCCGGTATCGGCAAGCTGCTCCGCCGTGGCGCGAAGCCCGGCGGTGA
CGATCATCCGCCCCTGGACA

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDT
VHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIA
FPPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT

Sequences:

>Translated_211_residues
MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDT
VHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIA
FPPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT
>Mature_210_residues
GIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAVGTIAEFLADKIAWVDSAWDTV
HSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLSHGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAF
PPFAIVIAILLAAGAAMVIVALRRLLRNVKATLRKAMGDEPPRTDPLPPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21691; Mature: 21560

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
GTIAEFLADKIAWVDSAWDTVHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
HGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAFPPFAIVIAILLAAGAAMVI
CCCHHHHHHEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VALRRLLRNVKATLRKAMGDEPPRTDPLPPT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GIVEILGVAGSLSLLAGWRLYLTILATGVAMHFGWLPLPEHLAALQVLANPWVLGVAAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
GTIAEFLADKIAWVDSAWDTVHSIIRPLGGALLALALVDASDPAWQVIAFLLGGGGALLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
HGAKATTRAVVNVSPEPVSNAVVSTGEDVATGGLLALAIAFPPFAIVIAILLAAGAAMVI
CCCHHHHHHEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VALRRLLRNVKATLRKAMGDEPPRTDPLPPT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA