Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487452
Identifier: 103487452
GI number: 103487452
Start: 2076787
End: 2077656
Strand: Direct
Name: 103487452
Synonym: Sala_1968
Alternate gene names: NA
Gene position: 2076787-2077656 (Clockwise)
Preceding gene: 103487451
Following gene: 103487454
Centisome position: 62.08
GC content: 58.97
Gene sequence:
>870_bases TTGGCATTATTTCGCCCGTCATTGCGGCGAAGGGCGGAATCTCACCCTCGCAATCTGACGCAGCGTCGATATTCCCGCCT TCGCCGGAATGAAGGGCGCGCCGAGGGTCACGTTCAACCAGAACCGCAGAAGTTCCAAATATCTCCGACACCGGGGTTGA ACCCACCGGCTCCGCAGCGTCGTCATTGCGAGGAGCGTAGCGACGAAGCAATCTCCAGCCGCCGTACAAAATGCTACGAA AGCTGGAGATTGCTTCGCTGCGCTCGCAATGACGCCTACGGCTACGAGCGCGGAATGCTCGCCAATGCACAAAGGGCCCC GAGCGATGCTCGGGGCCCTTTGGTATCTGTAGCGATCAGCCGATCTTACGGGCTGGTCGGTTCATCGTCGTCGTTGTCCG ACGCGATGATGATGCCGCCGATGACAGCCGCGAGAGCGAGAACAGCGATGATCCAGCTCGTGCTGCCTTCCAGTTCGCTC TGGCCATCAACGGCCGAAGCAGCGCGTGCCGCGGGAGCAGCCGACGCGGCAACAGGCGCCGCAATCATCGAGGTGGCTGC GAGGGAGATCGCAGCTTTCTTAAGCAGGTTCATCATTTTCTCCGTCCACTGGATAGTCTTGTCGAATCACACCGTGAAGT TCGTCCCCGGTCTGCTTCTGCCCGGCCTTCTTACGCACGGGCTTCGGCAATTGCAACGACGTTTTGCCCTACCCCCTGAA ATCTTAGTAAATTATAAACAGATGAAAACTTGTTGCCGGTTTCTCACCCACGCCGCACCCGCTCAAAGGCCTCGCTGGTC ACCGGATAGCCCAGATGATCGGGAATGCACAGATGGGACCGACCATCGCGATCCTCGATCCACGGCGTGA
Upstream 100 bases:
>100_bases GACGATCGTGCCGATCGACGCGACCGCGGCAACCAGGGCGCGCGCGGCAATTCCGCTGAGCCGGTCGCGCGCGATTCGCC GCATCGACCTTTAGGGCGGA
Downstream 100 bases:
>100_bases TCAGTTCGACCGGATATGCACATGAATGCGCCGAAAAGCTCGGGAAGTCGGGCGCCTGCGCCAGCCGTTCGAGATTGCGG CGCGTCGGGAAGATGACCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MALFRPSLRRRAESHPRNLTQRRYSRLRRNEGRAEGHVQPEPQKFQISPTPGLNPPAPQRRHCEERSDEAISSRRTKCYE SWRLLRCARNDAYGYERGMLANAQRAPSDARGPLVSVAISRSYGLVGSSSSLSDAMMMPPMTAARARTAMIQLVLPSSSL WPSTAEAARAAGAADAATGAAIIEVAAREIAAFLSRFIIFSVHWIVLSNHTVKFVPGLLLPGLLTHGLRQLQRRFALPPE ILVNYKQMKTCCRFLTHAAPAQRPRWSPDSPDDRECTDGTDHRDPRSTA
Sequences:
>Translated_289_residues MALFRPSLRRRAESHPRNLTQRRYSRLRRNEGRAEGHVQPEPQKFQISPTPGLNPPAPQRRHCEERSDEAISSRRTKCYE SWRLLRCARNDAYGYERGMLANAQRAPSDARGPLVSVAISRSYGLVGSSSSLSDAMMMPPMTAARARTAMIQLVLPSSSL WPSTAEAARAAGAADAATGAAIIEVAAREIAAFLSRFIIFSVHWIVLSNHTVKFVPGLLLPGLLTHGLRQLQRRFALPPE ILVNYKQMKTCCRFLTHAAPAQRPRWSPDSPDDRECTDGTDHRDPRSTA >Mature_288_residues ALFRPSLRRRAESHPRNLTQRRYSRLRRNEGRAEGHVQPEPQKFQISPTPGLNPPAPQRRHCEERSDEAISSRRTKCYES WRLLRCARNDAYGYERGMLANAQRAPSDARGPLVSVAISRSYGLVGSSSSLSDAMMMPPMTAARARTAMIQLVLPSSSLW PSTAEAARAAGAADAATGAAIIEVAAREIAAFLSRFIIFSVHWIVLSNHTVKFVPGLLLPGLLTHGLRQLQRRFALPPEI LVNYKQMKTCCRFLTHAAPAQRPRWSPDSPDDRECTDGTDHRDPRSTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32190; Mature: 32059
Theoretical pI: Translated: 11.07; Mature: 11.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALFRPSLRRRAESHPRNLTQRRYSRLRRNEGRAEGHVQPEPQKFQISPTPGLNPPAPQR CCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH RHCEERSDEAISSRRTKCYESWRLLRCARNDAYGYERGMLANAQRAPSDARGPLVSVAIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCEEEEEEC RSYGLVGSSSSLSDAMMMPPMTAARARTAMIQLVLPSSSLWPSTAEAARAAGAADAATGA CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCHHHHHHH AIIEVAAREIAAFLSRFIIFSVHWIVLSNHTVKFVPGLLLPGLLTHGLRQLQRRFALPPE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ILVNYKQMKTCCRFLTHAAPAQRPRWSPDSPDDRECTDGTDHRDPRSTA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ALFRPSLRRRAESHPRNLTQRRYSRLRRNEGRAEGHVQPEPQKFQISPTPGLNPPAPQR CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH RHCEERSDEAISSRRTKCYESWRLLRCARNDAYGYERGMLANAQRAPSDARGPLVSVAIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCEEEEEEC RSYGLVGSSSSLSDAMMMPPMTAARARTAMIQLVLPSSSLWPSTAEAARAAGAADAATGA CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEECCCCCCCCCHHHHHHHCCCHHHHHHH AIIEVAAREIAAFLSRFIIFSVHWIVLSNHTVKFVPGLLLPGLLTHGLRQLQRRFALPPE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ILVNYKQMKTCCRFLTHAAPAQRPRWSPDSPDDRECTDGTDHRDPRSTA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA