Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is sam [H]
Identifier: 103487346
GI number: 103487346
Start: 1957385
End: 1958386
Strand: Direct
Name: sam [H]
Synonym: Sala_1862
Alternate gene names: 103487346
Gene position: 1957385-1958386 (Clockwise)
Preceding gene: 103487340
Following gene: 103487347
Centisome position: 58.51
GC content: 66.37
Gene sequence:
>1002_bases ATGAAAGGTGGGTCACGGCTTGCGCGCGCGGTCGGGGCTGATATGCGCATGGGGTCCATGACCGCCGCCCCTTCCCTTGC CCAGCTCGCCGGGCCGCCGCAACATTATCTCGGCGGAATCTCGCTCAGGCTGCTCGCGATGGTCAGCCTTTCCTTCATGT TCGTGCTCGTCAAATATGTCGATGCCGCGGGCGTGCATATCGTCGAAAGCCTGTTCTGGCGGCAGGCGCTCGTGCTTCCC TTCCTGCTCGCTTGGGTGATGGCGACGAGCGGGCTTGCATCGCTCAGGACGCGGCGCATCGGCGCCCATGCGCGGCGCAT GGTCATGGGGCTCACCGGCATGGCGTGCAATTTCGGCGCGATGATCCTGCTGCCGATGGCCGAAGCGACGACGATCAGCC TGTCGGTGCCGATCTTTGCCGTCATTTTCGCCGCCATCCTGCTCGGCGAAGCGACGGGGTGGCAACGGTGGAGCGCGGTG ATCGTCGGCTTCGTCGGCGTGCTGCTCGTGCTCGATCCCATCGCAGGTTTCGCGGGCGGCTTCGGCGGCGACCATGGCGT CGGTACGCTCGTCGCGCTCAGCGGCGCGATCATGACCGCGCTCATCACCATTGCCGTGCGCGACCTCGGCCGCACTGAAA ATGCCGCGACGATCGTTTTCTGGTTCAGCCTCCTGTCGATGATTCCGCTCGGCATCGCGCTGCCCTTTGTCATCACGCCG CACGACGGGCGCGAATGGCTGTTGCTCGCCGGGCTCGGTTTTCTCGGCGCCGTCGTGCAGATGTCGCTGACGGGGGCGCT GCGGCTGGCACCCGTGTCGGTCGTGATCCCGATGGACTATTCCAGCCTGCTCTGGTCGATCGCGGCGGGCTGGTGGTTCT TCGGCACCCTGCCCGCCGACACGACGTGGATCGGCGCGCCGCTGATCGTCGCATCGGGGCTGTTCATCGCCTGGCGCGAG CATCGCCGCCATATCGACCGCCCGAAGGAGGTTGCCGCATGA
Upstream 100 bases:
>100_bases CCCGCGACCCTCGGTTTTGGAGACCGATGCTCTACCAACTGAGCTATACCCCTAGGCCGGAGTGCGCCCCTAGCCCGATT GGCGAGGCGGGGCAAGGGGG
Downstream 100 bases:
>100_bases CCCGTCCCATCCTCTATCATTGCCCCGACGCGCGCTCGCTGCGCTGCCTGTGGGCGGCCGAAGAGGCGGGGATCGACGTC GACCTCAGGCTGTTGCGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MKGGSRLARAVGADMRMGSMTAAPSLAQLAGPPQHYLGGISLRLLAMVSLSFMFVLVKYVDAAGVHIVESLFWRQALVLP FLLAWVMATSGLASLRTRRIGAHARRMVMGLTGMACNFGAMILLPMAEATTISLSVPIFAVIFAAILLGEATGWQRWSAV IVGFVGVLLVLDPIAGFAGGFGGDHGVGTLVALSGAIMTALITIAVRDLGRTENAATIVFWFSLLSMIPLGIALPFVITP HDGREWLLLAGLGFLGAVVQMSLTGALRLAPVSVVIPMDYSSLLWSIAAGWWFFGTLPADTTWIGAPLIVASGLFIAWRE HRRHIDRPKEVAA
Sequences:
>Translated_333_residues MKGGSRLARAVGADMRMGSMTAAPSLAQLAGPPQHYLGGISLRLLAMVSLSFMFVLVKYVDAAGVHIVESLFWRQALVLP FLLAWVMATSGLASLRTRRIGAHARRMVMGLTGMACNFGAMILLPMAEATTISLSVPIFAVIFAAILLGEATGWQRWSAV IVGFVGVLLVLDPIAGFAGGFGGDHGVGTLVALSGAIMTALITIAVRDLGRTENAATIVFWFSLLSMIPLGIALPFVITP HDGREWLLLAGLGFLGAVVQMSLTGALRLAPVSVVIPMDYSSLLWSIAAGWWFFGTLPADTTWIGAPLIVASGLFIAWRE HRRHIDRPKEVAA >Mature_333_residues MKGGSRLARAVGADMRMGSMTAAPSLAQLAGPPQHYLGGISLRLLAMVSLSFMFVLVKYVDAAGVHIVESLFWRQALVLP FLLAWVMATSGLASLRTRRIGAHARRMVMGLTGMACNFGAMILLPMAEATTISLSVPIFAVIFAAILLGEATGWQRWSAV IVGFVGVLLVLDPIAGFAGGFGGDHGVGTLVALSGAIMTALITIAVRDLGRTENAATIVFWFSLLSMIPLGIALPFVITP HDGREWLLLAGLGFLGAVVQMSLTGALRLAPVSVVIPMDYSSLLWSIAAGWWFFGTLPADTTWIGAPLIVASGLFIAWRE HRRHIDRPKEVAA
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 35392; Mature: 35392
Theoretical pI: Translated: 10.70; Mature: 10.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGGSRLARAVGADMRMGSMTAAPSLAQLAGPPQHYLGGISLRLLAMVSLSFMFVLVKYV CCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAAGVHIVESLFWRQALVLPFLLAWVMATSGLASLRTRRIGAHARRMVMGLTGMACNFGA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCC MILLPMAEATTISLSVPIFAVIFAAILLGEATGWQRWSAVIVGFVGVLLVLDPIAGFAGG EEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC FGGDHGVGTLVALSGAIMTALITIAVRDLGRTENAATIVFWFSLLSMIPLGIALPFVITP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC HDGREWLLLAGLGFLGAVVQMSLTGALRLAPVSVVIPMDYSSLLWSIAAGWWFFGTLPAD CCCCCEEEEHHHHHHHHHHHHHHHCCEEECCEEEEEECCHHHHHHHHHHHHHHEECCCCC TTWIGAPLIVASGLFIAWREHRRHIDRPKEVAA CCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHCC >Mature Secondary Structure MKGGSRLARAVGADMRMGSMTAAPSLAQLAGPPQHYLGGISLRLLAMVSLSFMFVLVKYV CCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAAGVHIVESLFWRQALVLPFLLAWVMATSGLASLRTRRIGAHARRMVMGLTGMACNFGA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHCCCC MILLPMAEATTISLSVPIFAVIFAAILLGEATGWQRWSAVIVGFVGVLLVLDPIAGFAGG EEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC FGGDHGVGTLVALSGAIMTALITIAVRDLGRTENAATIVFWFSLLSMIPLGIALPFVITP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC HDGREWLLLAGLGFLGAVVQMSLTGALRLAPVSVVIPMDYSSLLWSIAAGWWFFGTLPAD CCCCCEEEEHHHHHHHHHHHHHHHCCEEECCEEEEEECCHHHHHHHHHHHHHHEECCCCC TTWIGAPLIVASGLFIAWREHRRHIDRPKEVAA CCCCCCHHHHHCCHHHHHHHHHHHCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA