Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487340

Identifier: 103487340

GI number: 103487340

Start: 1951124

End: 1952023

Strand: Direct

Name: 103487340

Synonym: Sala_1856

Alternate gene names: NA

Gene position: 1951124-1952023 (Clockwise)

Preceding gene: 103487339

Following gene: 103487346

Centisome position: 58.33

GC content: 66.56

Gene sequence:

>900_bases
ATGCGCCCCGATTCGCCCTCGCCCGTCATCCCCTTCCTGATCGCCTGCGCGGGGATCGCGACCTTTTCGGCGATGGACGT
GCTGATGAAGGGGCTGTCGATTAACATCGGCGCCTATAACGCGGTCCTCTGGCGCACCGGCGCCGGGGCATTGCTGAGCG
GGCTTATCTATTTCGCGAGCCGCCCCAAATGGCCCGGCCAGGCGACGATGCGGATCCACGCCTGGCGTTCGCTCTTCGTC
GCGGGCATGGCGCTCTGCTTCTTCTGGGCGCTCGCGCGGCTGCCGATCGCCGAAGCGATCGCGATCGCCTTCGTCGCGCC
GTTGATGGCGCTTTACATGGCTGCGATCTTCCTCGGTGAAAAGATCGGCCCGCGCTCGATCGCAGCCTCGCTGCTCGGGC
TCATCGGGGTGATCGTGATCGTCGCGGGCAAATTGGGCGGCGATTACAGCGACGAAGCGCTGCTCGCGGTGGGCGCGGTG
TTCCTTTCGGCGGTCTTCTACGCCTATAATCTCGTCCTCGCGCGGCGGCAGGCGAAGATGGCCGAACCGCTGGAAATCGC
CTTTTTCCAGAATGCGTTCGTGACCGCGATCCTCGCGGTCGGCGCGCCCTGGTTCCTCGCCGTCCCCGCCGCAAGCCATG
CGCCGCACATCGCCGGCGCCGCGGCGCTCGCAACGGCATCGCTGCTGTTGCTGAGCTGGGCCTATGCCCGTGCCGAGACG
CAGATCCTCGCGACGACCGAATATACCGGCTTCCTCTGGGCGATGCTCTTCGGCTGGATGTTCTTCGACGAAGCGGTGAC
CTGGCCGACAATCGCCGGCGCCTTCCTCATCGTCGCCGCCTGCCTGATCGTCACGCGCAAGGCGCCCCACGGCGATCCGA
TTGAACCCGCCGCGGCGTGA

Upstream 100 bases:

>100_bases
GGCGTAAACCGCTCTGGATTGGTTGGCCTGCGATCGCCTTCGGCCCGCACCGCTCGAATGACGATTCAACTCCGACGCCA
CTTCCTGTAGTCGCCCTCCC

Downstream 100 bases:

>100_bases
ACACCGGGACACGCTTGTTTCCGTTCGTGTCGAGCGAAGTCGAGCAACCGATCGACACGGCGCAAGTTCGAGGCGTATCG
CGACTTCCCCGGATGCGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV
AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV
FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET
QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA

Sequences:

>Translated_299_residues
MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV
AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV
FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET
QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA
>Mature_299_residues
MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV
AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV
FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET
QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31665; Mature: 31665

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHEEECCHHHHHHHHHHHHC
RPKWPGQATMRIHAWRSLFVAGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
KIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAVFLSAVFYAYNLVLARRQAKM
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA
EEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHEEECCHHHHHHHHHHHHC
RPKWPGQATMRIHAWRSLFVAGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
KIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAVFLSAVFYAYNLVLARRQAKM
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA
EEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA