Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487340
Identifier: 103487340
GI number: 103487340
Start: 1951124
End: 1952023
Strand: Direct
Name: 103487340
Synonym: Sala_1856
Alternate gene names: NA
Gene position: 1951124-1952023 (Clockwise)
Preceding gene: 103487339
Following gene: 103487346
Centisome position: 58.33
GC content: 66.56
Gene sequence:
>900_bases ATGCGCCCCGATTCGCCCTCGCCCGTCATCCCCTTCCTGATCGCCTGCGCGGGGATCGCGACCTTTTCGGCGATGGACGT GCTGATGAAGGGGCTGTCGATTAACATCGGCGCCTATAACGCGGTCCTCTGGCGCACCGGCGCCGGGGCATTGCTGAGCG GGCTTATCTATTTCGCGAGCCGCCCCAAATGGCCCGGCCAGGCGACGATGCGGATCCACGCCTGGCGTTCGCTCTTCGTC GCGGGCATGGCGCTCTGCTTCTTCTGGGCGCTCGCGCGGCTGCCGATCGCCGAAGCGATCGCGATCGCCTTCGTCGCGCC GTTGATGGCGCTTTACATGGCTGCGATCTTCCTCGGTGAAAAGATCGGCCCGCGCTCGATCGCAGCCTCGCTGCTCGGGC TCATCGGGGTGATCGTGATCGTCGCGGGCAAATTGGGCGGCGATTACAGCGACGAAGCGCTGCTCGCGGTGGGCGCGGTG TTCCTTTCGGCGGTCTTCTACGCCTATAATCTCGTCCTCGCGCGGCGGCAGGCGAAGATGGCCGAACCGCTGGAAATCGC CTTTTTCCAGAATGCGTTCGTGACCGCGATCCTCGCGGTCGGCGCGCCCTGGTTCCTCGCCGTCCCCGCCGCAAGCCATG CGCCGCACATCGCCGGCGCCGCGGCGCTCGCAACGGCATCGCTGCTGTTGCTGAGCTGGGCCTATGCCCGTGCCGAGACG CAGATCCTCGCGACGACCGAATATACCGGCTTCCTCTGGGCGATGCTCTTCGGCTGGATGTTCTTCGACGAAGCGGTGAC CTGGCCGACAATCGCCGGCGCCTTCCTCATCGTCGCCGCCTGCCTGATCGTCACGCGCAAGGCGCCCCACGGCGATCCGA TTGAACCCGCCGCGGCGTGA
Upstream 100 bases:
>100_bases GGCGTAAACCGCTCTGGATTGGTTGGCCTGCGATCGCCTTCGGCCCGCACCGCTCGAATGACGATTCAACTCCGACGCCA CTTCCTGTAGTCGCCCTCCC
Downstream 100 bases:
>100_bases ACACCGGGACACGCTTGTTTCCGTTCGTGTCGAGCGAAGTCGAGCAACCGATCGACACGGCGCAAGTTCGAGGCGTATCG CGACTTCCCCGGATGCGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA
Sequences:
>Translated_299_residues MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA >Mature_299_residues MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFASRPKWPGQATMRIHAWRSLFV AGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGEKIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAV FLSAVFYAYNLVLARRQAKMAEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31665; Mature: 31665
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFAS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHEEECCHHHHHHHHHHHHC RPKWPGQATMRIHAWRSLFVAGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC KIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAVFLSAVFYAYNLVLARRQAKM CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA EEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRPDSPSPVIPFLIACAGIATFSAMDVLMKGLSINIGAYNAVLWRTGAGALLSGLIYFAS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHEEECCHHHHHHHHHHHHC RPKWPGQATMRIHAWRSLFVAGMALCFFWALARLPIAEAIAIAFVAPLMALYMAAIFLGE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC KIGPRSIAASLLGLIGVIVIVAGKLGGDYSDEALLAVGAVFLSAVFYAYNLVLARRQAKM CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEPLEIAFFQNAFVTAILAVGAPWFLAVPAASHAPHIAGAAALATASLLLLSWAYARAET CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QILATTEYTGFLWAMLFGWMFFDEAVTWPTIAGAFLIVAACLIVTRKAPHGDPIEPAAA EEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA