Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487178

Identifier: 103487178

GI number: 103487178

Start: 1783430

End: 1784266

Strand: Direct

Name: 103487178

Synonym: Sala_1693

Alternate gene names: NA

Gene position: 1783430-1784266 (Clockwise)

Preceding gene: 103487177

Following gene: 103487179

Centisome position: 53.31

GC content: 69.3

Gene sequence:

>837_bases
ATGGACGATTATTCCGCCTGGATCGGCCGCGGTGAAACGCGCGAGGATGTCGCGACTGCGGTGCCGATCGAAGGCCTCGC
CGCTCTGCTCGACCACGACGCGCCGCCATGGGTGCCCGGCATGGTGCCACCGCTCGGGCACTGGCTCTATTTCCTGCCGA
CCGCGCGCCAGTCAACGATTGGCGAGGATGGACACCCCCGCCGCGACGGGCACGGCCTGCTGCCGCCCGTGCCGCTCCCT
CGCCGCATGTGGGCGGGCAGCCGCATCGATTTCCTCTCCCCCATTCCCATCGGCGCGGCGCTGACGCGCGTGACGACGAT
CGATGCGATCAGGCCCAGACGCGGCGCGAGCGGCGATCTTCTGTTCGTGACGCTTCGGCACGAGATATCGGCAAATGGCG
TCGCCGCGATCCGCGAAGAACAGGATATCGTGTTTCGCGAGGCCGCAAGCGCGGCACCGGTCCCCGCCGCCACGCCCCCG
GCTGCCGCCGCCCCCGAACCCGCCGATACCGTCCGCAGCATCATGCCCGACCCTGTGCTGCTCTTCCGTTATTCGGCGCT
GACCTTCAACGCGCACCGCATCCATTATGACCGCGACTATGCAGTGGGTGTCGAGGGTTATGCCGGGCTCGTCGTCCACG
GCCCGCTCATCGCGACGCTGCTGATGGATCATGCCCTGCGCGCCGGGCTGTCCCCCCGCACCTTCGCTTTCCGCGCCGAG
GCGCCGCTCACCGACGGGGCGCCGTTCGATCTCTGCCTCGCGTACGACGCCGACGGTGCGCGGCTATGGGCGCGCAATTC
CGCCGGACGCCGCACGATGCACGTCAGCCTGACCTGA

Upstream 100 bases:

>100_bases
AGTTCCGCGAAACCCGGCTCTATCAGGTCGCGCCGATCAGCACGAACCTCATCCTCAGCCATGTCGCAACGCACGCGCTT
GGCCTGCCCAAGAGCTTCTG

Downstream 100 bases:

>100_bases
ACCAACCGCCGAAAGCAGCGCGATCGGTTGGGTGGCGCATCGCCCAAACATGGAATCCAAGCCGTGTCGCGATGACGCGT
TGAACCACGCCGACGGGACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP
RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP
AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE
APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT

Sequences:

>Translated_278_residues
MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP
RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP
AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE
APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT
>Mature_278_residues
MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTIGEDGHPRRDGHGLLPPVPLP
RRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDLLFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPP
AAAAPEPADTVRSIMPDPVLLFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE
APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT

Specific function: Unknown

COG id: COG3777

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30023; Mature: 30023

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTI
CCCCHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHCC
GEDGHPRRDGHGLLPPVPLPRRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDL
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE
LFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPPAAAAPEPADTVRSIMPDPVL
EEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE
LFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE
EEEEEEEEEEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEC
APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT
CCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEC
>Mature Secondary Structure
MDDYSAWIGRGETREDVATAVPIEGLAALLDHDAPPWVPGMVPPLGHWLYFLPTARQSTI
CCCCHHHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHCC
GEDGHPRRDGHGLLPPVPLPRRMWAGSRIDFLSPIPIGAALTRVTTIDAIRPRRGASGDL
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE
LFVTLRHEISANGVAAIREEQDIVFREAASAAPVPAATPPAAAAPEPADTVRSIMPDPVL
EEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE
LFRYSALTFNAHRIHYDRDYAVGVEGYAGLVVHGPLIATLLMDHALRAGLSPRTFAFRAE
EEEEEEEEEEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEC
APLTDGAPFDLCLAYDADGARLWARNSAGRRTMHVSLT
CCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA