| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487114
Identifier: 103487114
GI number: 103487114
Start: 1709365
End: 1709886
Strand: Direct
Name: 103487114
Synonym: Sala_1629
Alternate gene names: NA
Gene position: 1709365-1709886 (Clockwise)
Preceding gene: 103487113
Following gene: 103487115
Centisome position: 51.1
GC content: 65.33
Gene sequence:
>522_bases ATGAACCGCAAGGGTCCGCGCCTTGGCGAACCCGCCTCGCTGTGGCGGATGCGGATCGTGCCCGTGGCGAGCGTGATGCT CGCCTCGGCGCTGCCGCTGATGCTGCCGCTGATCGCCAGTTCGCCGGTGCTGCCGCCGGTCGGCCTGCTGTTTTTCCTCT GCTGGCAATTACTGCGCACCGAAATGTGGCCGGTGTGGGTCGGGCTGCCGCTCGGCCTGTGGGACGATCTGTTCAGCGGC GCGCCGATCGGCACCGCGGCCGGACTATGGACGCTCGCGAGCATCGCCATCGCTTATTCGTCGCAGCGCATTTACTGGCG CGGTTTCTTTCACGACTGGGTGATCGCCGGGCTGTTGATTGCGGCGATCCAGTCGCTCGCCGCGCTCATCACCCACCCCG ATGCCGATACCGCGCATGTGCTCGGGCTGGTCGTGCCGCAGATCGTCATTTCGGTGTTGCTGGTGCCGCTGATCATGCGC CTGACCGGCAAGTTTGACAACTTCCGGCTGAAACGCCGATAA
Upstream 100 bases:
>100_bases GCAAGGTCGACGCCGTCGCGGTGCTGCGCCCCTATACCCCCGACAATATCGAGGCGGCGGGTCGCCCCGGTCCGGCCGCG CTCCCTGTCGCCGCCGCGCC
Downstream 100 bases:
>100_bases AACTGCGCACATGTTCAACAAGAAGCACCCGCCGATCACCGAAGCGTGGAGGGGTCTCACCTTCACCCGCCGCGCGCTCG TCGTCGGCGGCGCGCAAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MNRKGPRLGEPASLWRMRIVPVASVMLASALPLMLPLIASSPVLPPVGLLFFLCWQLLRTEMWPVWVGLPLGLWDDLFSG APIGTAAGLWTLASIAIAYSSQRIYWRGFFHDWVIAGLLIAAIQSLAALITHPDADTAHVLGLVVPQIVISVLLVPLIMR LTGKFDNFRLKRR
Sequences:
>Translated_173_residues MNRKGPRLGEPASLWRMRIVPVASVMLASALPLMLPLIASSPVLPPVGLLFFLCWQLLRTEMWPVWVGLPLGLWDDLFSG APIGTAAGLWTLASIAIAYSSQRIYWRGFFHDWVIAGLLIAAIQSLAALITHPDADTAHVLGLVVPQIVISVLLVPLIMR LTGKFDNFRLKRR >Mature_173_residues MNRKGPRLGEPASLWRMRIVPVASVMLASALPLMLPLIASSPVLPPVGLLFFLCWQLLRTEMWPVWVGLPLGLWDDLFSG APIGTAAGLWTLASIAIAYSSQRIYWRGFFHDWVIAGLLIAAIQSLAALITHPDADTAHVLGLVVPQIVISVLLVPLIMR LTGKFDNFRLKRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19100; Mature: 19100
Theoretical pI: Translated: 11.02; Mature: 11.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKGPRLGEPASLWRMRIVPVASVMLASALPLMLPLIASSPVLPPVGLLFFLCWQLLRT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH EMWPVWVGLPLGLWDDLFSGAPIGTAAGLWTLASIAIAYSSQRIYWRGFFHDWVIAGLLI HHCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH AAIQSLAALITHPDADTAHVLGLVVPQIVISVLLVPLIMRLTGKFDNFRLKRR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure MNRKGPRLGEPASLWRMRIVPVASVMLASALPLMLPLIASSPVLPPVGLLFFLCWQLLRT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH EMWPVWVGLPLGLWDDLFSGAPIGTAAGLWTLASIAIAYSSQRIYWRGFFHDWVIAGLLI HHCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH AAIQSLAALITHPDADTAHVLGLVVPQIVISVLLVPLIMRLTGKFDNFRLKRR HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA