| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is mreC [H]
Identifier: 103487113
GI number: 103487113
Start: 1708466
End: 1709368
Strand: Direct
Name: mreC [H]
Synonym: Sala_1628
Alternate gene names: 103487113
Gene position: 1708466-1709368 (Clockwise)
Preceding gene: 103487112
Following gene: 103487114
Centisome position: 51.07
GC content: 69.88
Gene sequence:
>903_bases GTGGTCCGCCCGGCACATCGACGTCCGGGGCAATCCCGAAAGGCCCAGTACAGCCTGTTCGTCGCCTATGTCATCGCGGT GACCGGCGCGGTGGCCGGGCTGTTGCTCGCGATATTGTCGGTCGCCGATCCCGTCGGCTTTGCCCAGCTGCGCATCGCAA GCCAGGAACTCGCCGCACCGATCGCGCGCGGGACGCGCTCGGTCATCGGTTCGATTTCGGGCATCGACGACAGCGTCGGC GCCTATGTCGCCGCAGGATCGCAGAACCGGCGGCTGCGCAAGGAGCTGGCCGACACGCGGCGCCAGCTGGTCGCGACCAG TTCGCTCCAGGAAGAGAATCGGCAGCTCAAGGCACTGCTCAAGCTCCAGGAAACCGACAAGACCGCGCTCGCCAACGGCT ATCTGCTCACCTCGACCTCGACGAGCAGCAGGCGCATCGCATTGCTCAGCATCGGGCGCAATCTGGGCGTCGCCGCGGGC CAGCCGGTGCGCGGCGCCGACGGGCTGATCGGCCGCGTGCTGACCGCCGGGCCGTCGGTGTCGCAGGTGCTGTTGCTCAC CGACGTCGACAATATCGTCCCCGTGCGCCGCGCGCGCGACGGGCTGCCCGCGCTCGCCAGCGGTCGCGGCAACGGCTATC TTGACGTTCGCACGCTCAATATCGCGAACAATCCGTTCAAGCCCGGCGACATCCTGGTCACATCGGGCACCGGCGGCCTC TATCCGCCGAACATCCCCGTCGCGATCGTCGTGCGGCGCCAGGACGACGGCGCGCTCGCGCGTCCGCTCGCCGACCCCGG CAAGGTCGACGCCGTCGCGGTGCTGCGCCCCTATACCCCCGACAATATCGAGGCGGCGGGTCGCCCCGGTCCGGCCGCGC TCCCTGTCGCCGCCGCGCCATGA
Upstream 100 bases:
>100_bases ACGATCCGCTGACCTGCGTTGCGATCGGCACCGGTCGCGCGATGGAAGACCCCGCCTTCCGCGGCGTGCTCCAACAAGCC TGATCGGGTAGCATCGCGTC
Downstream 100 bases:
>100_bases ACCGCAAGGGTCCGCGCCTTGGCGAACCCGCCTCGCTGTGGCGGATGCGGATCGTGCCCGTGGCGAGCGTGATGCTCGCC TCGGCGCTGCCGCTGATGCT
Product: rod shape-determining protein MreC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MVRPAHRRPGQSRKAQYSLFVAYVIAVTGAVAGLLLAILSVADPVGFAQLRIASQELAAPIARGTRSVIGSISGIDDSVG AYVAAGSQNRRLRKELADTRRQLVATSSLQEENRQLKALLKLQETDKTALANGYLLTSTSTSSRRIALLSIGRNLGVAAG QPVRGADGLIGRVLTAGPSVSQVLLLTDVDNIVPVRRARDGLPALASGRGNGYLDVRTLNIANNPFKPGDILVTSGTGGL YPPNIPVAIVVRRQDDGALARPLADPGKVDAVAVLRPYTPDNIEAAGRPGPAALPVAAAP
Sequences:
>Translated_300_residues MVRPAHRRPGQSRKAQYSLFVAYVIAVTGAVAGLLLAILSVADPVGFAQLRIASQELAAPIARGTRSVIGSISGIDDSVG AYVAAGSQNRRLRKELADTRRQLVATSSLQEENRQLKALLKLQETDKTALANGYLLTSTSTSSRRIALLSIGRNLGVAAG QPVRGADGLIGRVLTAGPSVSQVLLLTDVDNIVPVRRARDGLPALASGRGNGYLDVRTLNIANNPFKPGDILVTSGTGGL YPPNIPVAIVVRRQDDGALARPLADPGKVDAVAVLRPYTPDNIEAAGRPGPAALPVAAAP >Mature_300_residues MVRPAHRRPGQSRKAQYSLFVAYVIAVTGAVAGLLLAILSVADPVGFAQLRIASQELAAPIARGTRSVIGSISGIDDSVG AYVAAGSQNRRLRKELADTRRQLVATSSLQEENRQLKALLKLQETDKTALANGYLLTSTSTSSRRIALLSIGRNLGVAAG QPVRGADGLIGRVLTAGPSVSQVLLLTDVDNIVPVRRARDGLPALASGRGNGYLDVRTLNIANNPFKPGDILVTSGTGGL YPPNIPVAIVVRRQDDGALARPLADPGKVDAVAVLRPYTPDNIEAAGRPGPAALPVAAAP
Specific function: Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins [H]
COG id: COG1792
COG function: function code M; Cell shape-determining protein
Gene ontology:
Cell location: Inner Membrane-Anchored [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mreC family [H]
Homologues:
Organism=Escherichia coli, GI1789648, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007221 - InterPro: IPR005223 [H]
Pfam domain/function: PF04085 MreC [H]
EC number: NA
Molecular weight: Translated: 31218; Mature: 31218
Theoretical pI: Translated: 11.09; Mature: 11.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRPAHRRPGQSRKAQYSLFVAYVIAVTGAVAGLLLAILSVADPVGFAQLRIASQELAAP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECHHHHHHH IARGTRSVIGSISGIDDSVGAYVAAGSQNRRLRKELADTRRQLVATSSLQEENRQLKALL HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLQETDKTALANGYLLTSTSTSSRRIALLSIGRNLGVAAGQPVRGADGLIGRVLTAGPSV HHHHCCCHHHHCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCH SQVLLLTDVDNIVPVRRARDGLPALASGRGNGYLDVRTLNIANNPFKPGDILVTSGTGGL HEEEEEECCCHHHHHHHHCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCCC YPPNIPVAIVVRRQDDGALARPLADPGKVDAVAVLRPYTPDNIEAAGRPGPAALPVAAAP CCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVRPAHRRPGQSRKAQYSLFVAYVIAVTGAVAGLLLAILSVADPVGFAQLRIASQELAAP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECHHHHHHH IARGTRSVIGSISGIDDSVGAYVAAGSQNRRLRKELADTRRQLVATSSLQEENRQLKALL HHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLQETDKTALANGYLLTSTSTSSRRIALLSIGRNLGVAAGQPVRGADGLIGRVLTAGPSV HHHHCCCHHHHCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCH SQVLLLTDVDNIVPVRRARDGLPALASGRGNGYLDVRTLNIANNPFKPGDILVTSGTGGL HEEEEEECCCHHHHHHHHCCCCCHHHCCCCCCEEEEEEEEECCCCCCCCCEEEECCCCCC YPPNIPVAIVVRRQDDGALARPLADPGKVDAVAVLRPYTPDNIEAAGRPGPAALPVAAAP CCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]