Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486104
Identifier: 103486104
GI number: 103486104
Start: 621473
End: 622231
Strand: Direct
Name: 103486104
Synonym: Sala_0611
Alternate gene names: NA
Gene position: 621473-622231 (Clockwise)
Preceding gene: 103486103
Following gene: 103486105
Centisome position: 18.58
GC content: 69.17
Gene sequence:
>759_bases ATGCGGACCCCGCGCAATGATCAACTGAGCCAAACCGACCGCGCAAAGGGGCGCGGCCACCATGTGCCCGAGCGGCGCTG CGTCGTCACCGGTGAGGTTTCGCCGGTAGAGCGGCTCGTGCGTCTGGCGCTCGGTCCCGACGGCGGCATTGCGCCGGATG TTCACGGCAAGGCGCCTGGCCGCGGCGCGTGGATCGGCGTCGACCGCGTGACCCTCGAAGCTGCGCAGGCCAAGGGCAAG CTCAAGGCGGGCCTCGCGCGCGCGCTGCACGAAGGCGGCTTCACGATCCCCGACGATCTGGGCGCGCGGATCGAGGCGCA GCTGGCCCGCGCGACGCTCGACCGGCTGGGACTCGAATCGCGAGCGGGAATGCTCATCAGCGGCAACGACAAGATCGAAC AGGCGGCGCGGCGCGGGCAGGTTCGCCTGCTCCTCCACGCGAGCGATGCGGGTGACGACGGTCGCAAGAAACTGGCGCAG GCGTGGCGCGTCGGCGAGGATGACGAAGGATCGGGCCGCGAAGGACTGGTCTTGCCGGTAGACCGCGGCACCCTATCTAT GGCATTGGGGCGCGAGAATGCGGTGCATCTGGCGATTGTCGACGCCCGCGCCGCCGACCGGGTGCTGGCGCACTTGAGCC GCTGGCAGTTTTTCACCGGATGGAGTAGGGACGCGGCCAATCGCGTTTCGGATACGGATTCCCGCGAGCCGGGAACAGGG GATACGTCCGCGGCTTCCGCCGTTTCGGGCGCGTTTTGA
Upstream 100 bases:
>100_bases GAGATCATCATGGCGGCGCGTGCGCACTGGTTCGACGATGAGGAGTCGAGCGAGCCGGCAACCGCGCCCGCGGCGGAGCC GCAAAACGGGGAGGCCGCCG
Downstream 100 bases:
>100_bases AGGAATGATGGTTTTCGATGAGTGACGAACAGGACAAGCCGACCCTTAGCCGCAAGCCGCTGGGCCTGAAGCGGACGGTC GAGGCCGGACAGGTGCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MRTPRNDQLSQTDRAKGRGHHVPERRCVVTGEVSPVERLVRLALGPDGGIAPDVHGKAPGRGAWIGVDRVTLEAAQAKGK LKAGLARALHEGGFTIPDDLGARIEAQLARATLDRLGLESRAGMLISGNDKIEQAARRGQVRLLLHASDAGDDGRKKLAQ AWRVGEDDEGSGREGLVLPVDRGTLSMALGRENAVHLAIVDARAADRVLAHLSRWQFFTGWSRDAANRVSDTDSREPGTG DTSAASAVSGAF
Sequences:
>Translated_252_residues MRTPRNDQLSQTDRAKGRGHHVPERRCVVTGEVSPVERLVRLALGPDGGIAPDVHGKAPGRGAWIGVDRVTLEAAQAKGK LKAGLARALHEGGFTIPDDLGARIEAQLARATLDRLGLESRAGMLISGNDKIEQAARRGQVRLLLHASDAGDDGRKKLAQ AWRVGEDDEGSGREGLVLPVDRGTLSMALGRENAVHLAIVDARAADRVLAHLSRWQFFTGWSRDAANRVSDTDSREPGTG DTSAASAVSGAF >Mature_252_residues MRTPRNDQLSQTDRAKGRGHHVPERRCVVTGEVSPVERLVRLALGPDGGIAPDVHGKAPGRGAWIGVDRVTLEAAQAKGK LKAGLARALHEGGFTIPDDLGARIEAQLARATLDRLGLESRAGMLISGNDKIEQAARRGQVRLLLHASDAGDDGRKKLAQ AWRVGEDDEGSGREGLVLPVDRGTLSMALGRENAVHLAIVDARAADRVLAHLSRWQFFTGWSRDAANRVSDTDSREPGTG DTSAASAVSGAF
Specific function: Unknown
COG id: COG2740
COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26807; Mature: 26807
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTPRNDQLSQTDRAKGRGHHVPERRCVVTGEVSPVERLVRLALGPDGGIAPDVHGKAPG CCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC RGAWIGVDRVTLEAAQAKGKLKAGLARALHEGGFTIPDDLGARIEAQLARATLDRLGLES CCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHCCHH RAGMLISGNDKIEQAARRGQVRLLLHASDAGDDGRKKLAQAWRVGEDDEGSGREGLVLPV HCCEEEECCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE DRGTLSMALGRENAVHLAIVDARAADRVLAHLSRWQFFTGWSRDAANRVSDTDSREPGTG CCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC DTSAASAVSGAF CCHHHHHHCCCC >Mature Secondary Structure MRTPRNDQLSQTDRAKGRGHHVPERRCVVTGEVSPVERLVRLALGPDGGIAPDVHGKAPG CCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC RGAWIGVDRVTLEAAQAKGKLKAGLARALHEGGFTIPDDLGARIEAQLARATLDRLGLES CCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHCCHH RAGMLISGNDKIEQAARRGQVRLLLHASDAGDDGRKKLAQAWRVGEDDEGSGREGLVLPV HCCEEEECCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE DRGTLSMALGRENAVHLAIVDARAADRVLAHLSRWQFFTGWSRDAANRVSDTDSREPGTG CCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC DTSAASAVSGAF CCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA