Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485820

Identifier: 103485820

GI number: 103485820

Start: 331593

End: 332309

Strand: Direct

Name: 103485820

Synonym: Sala_0325

Alternate gene names: NA

Gene position: 331593-332309 (Clockwise)

Preceding gene: 103485819

Following gene: 103485821

Centisome position: 9.91

GC content: 74.34

Gene sequence:

>717_bases
ATGAGCGTGCGGCGGCGCTGGATCGTTGCGGCGGCGCTGCTGGCGCTCGTCCTGCTTGTCGCGACCTTTCCGATGCGCCT
CGCGCTCGGCTGGTCGGGGGCGGGCGACGCGGGGGTGTCGGCGCGGACGGTGCGCGGATCGGTCTGGTCGGCCGAACTGG
TCGATGCGCGGCTCGGCGCGCTGCCGCTCGGCACGGTGCGCGCCAGCCTGTCGCCGCTGGCGCTGCTCACCGGCGCGACC
GAACTGGCTTTCGAGCGCAGCGACGACCGGCTCGGCGCGCTCGCGGGACGGCTGCACGGCACCAGTCCGCGCGGCATGTC
CGACGTCAATGGGATGAGCGCGATGGTCGGCGGGCTGGGCATGATCCCGGTCGATACGATCCGCTTCGAGGGCGCGACGG
TGCGCTTCGACGATGCGGGCAAATGCGTGCGCGCGAGCGGCCGGGTGCAGCTGATGGTCGCCGCGCCGATCGCGGGGCTC
GACCTGTCGCGCGGGCTCTCCGGCCCGCTCCGCTGCGCGAACGGGCGCGCCGAAGCGGCGCTCGCCAGCCAGTCGGGGAT
GGAGCGGTTGACGCTGATCTTCGATGGCGGCGGGGCCTGGCGCGCACGCCTTGCCATCAGCGTCGACCGCGATCCGACAA
TGGCGGCGGCGCTCGCGGCGCTGGGCTTCCGCGCTGCGCCGGGCGGGTTCGTGCTGGCGACTTCGGGTCGCTTCTGA

Upstream 100 bases:

>100_bases
CGTCGCTCGAAGCGCAGGGCTTTGTCATCGACCAGCTCACCATCACCCCCGCCGCCGACGGCACGGTCGGGATGACGGCG
GAACTCAGAAAGGGCGGACA

Downstream 100 bases:

>100_bases
AAGATGAATAGCGCAGCATATCCCGTTCGCGTCGAGCGAAGTCGAGACGCCGTGCCGGCCAGCCGGGCGTCTCGACTTCG
CTCGACGCGAACGGATTAGA

Product: type II secretion system protein N

Products: NA

Alternate protein names: Type II Secretory Pathway Component PulN

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGAT
ELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGL
DLSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF

Sequences:

>Translated_238_residues
MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGAT
ELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGL
DLSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF
>Mature_237_residues
SVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGALPLGTVRASLSPLALLTGATE
LAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLGMIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLD
LSRGLSGPLRCANGRAEAALASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24459; Mature: 24328

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCC
LPLGTVRASLSPLALLTGATELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLG
CCCHHHHHCCCCHHHHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC
MIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLDLSRGLSGPLRCANGRAEAA
CCCEEEEEECCCEEEECCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEECCCCCHHH
LASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF
HHHHCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCC
>Mature Secondary Structure 
SVRRRWIVAAALLALVLLVATFPMRLALGWSGAGDAGVSARTVRGSVWSAELVDARLGA
CCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCC
LPLGTVRASLSPLALLTGATELAFERSDDRLGALAGRLHGTSPRGMSDVNGMSAMVGGLG
CCCHHHHHCCCCHHHHHCCHHHEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCC
MIPVDTIRFEGATVRFDDAGKCVRASGRVQLMVAAPIAGLDLSRGLSGPLRCANGRAEAA
CCCEEEEEECCCEEEECCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEECCCCCHHH
LASQSGMERLTLIFDGGGAWRARLAISVDRDPTMAAALAALGFRAAPGGFVLATSGRF
HHHHCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA