Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485818

Identifier: 103485818

GI number: 103485818

Start: 329984

End: 331117

Strand: Direct

Name: 103485818

Synonym: Sala_0323

Alternate gene names: NA

Gene position: 329984-331117 (Clockwise)

Preceding gene: 103485817

Following gene: 103485819

Centisome position: 9.86

GC content: 72.84

Gene sequence:

>1134_bases
TTGCTGATCTGGTTGCCGCGAGTGGCGGCGCTTGCGGACGCCGCCGCCGCGCCCGCGGCGTGGCTTCGCATCGACGACGG
CGTTGTCGTCGACAGCGGGCAGGACGACGGCTGGGTCGCCGATTGGGAAAAGCAGGGCGACGATGGCCCCGACGACCGGT
TGATTGCGCTGGCGCCCGCCGCCGACGTGCCGCTCCGTTGGTTCCACTATCCCGACGCCGCCCCCGCACAGGCCGCCGCC
GCGGCGCGCATCGACGCGCTGAAGGCCAGCCTGGGCGATGCCGCCGGGCTGCATGTCGTTGCGGGGCAGCCCACCGAGAT
GGGGCAAGCGGTGCCGGTGGCCGTGACGACGCACGCGGCGATGACCGGCTGGACCGGCTGGCTGGCGGCGCGCGGGCTGA
CCGCAGCGGCGATCATTCCGGCCGCTGCTGCGTTGCCGCCGCCCGAAGCCGACAGCCTGTGGTCGGCCGAACTGGGCGGC
GAGCGGATCATCCGCTCGGCCGACCGCGCCTGGGCGTCCGACCCCGAACTCGACCCGCTGATCGCGGGCAATCACGATGT
CGCACCGCTCGATGCCGAAGCGATGCGCGAGGCGCTGTTGCTGACGCTCGCGGCGCCGCCGCTCGACCTGTTGAGCGGCG
CGTGGAAGCCGAAGCGCCGCTGGGCGGTCGATCCGGCGATGCTGCGGCTCGCGAAACGGCTGGCGATCGCGCTGGTCGCC
GTGAGCGTTGCGATTCCGATCGTCTACGCGCTGCGCCTGACCGCCGATACCAGCCGCGCCGATGACGCGGTGGTGGCGAT
GGCGACAAGGGCCGGGGTCACGGCGTCCGATGCGAGCGCCGCGGAAACCGAGATCGACCGTCGGCTGGCGACCGCGGGGG
GCGGGCCCCTCGCCTTTTCGGTGCCAGCATCGGCGCTCTACGACGCGATGCGCGATGCGCCGGGCGTGTCGCTCAAAAAC
CTGTCGCACCGCACCGACGGCACGCTGACGACGACGCTCGCGGCGCCGCGCGTCGACGACATCAACCAGGTGCTGCTGGC
GTTGCAGGCGCGTGGCTATCGCATCACGGCGCAGCCGATGGCGGGGGCCGGCGGACAGCAGATGGCCCATGTCACGATCC
GGGCGGTGCCATGA

Upstream 100 bases:

>100_bases
TCACTCATCGACGCCAATGGCGGCGCGCCGTCGGTCGGCACGGCCCCTCCGGTGATCGTGCGCCGCGACTGGGGCGAAAG
CGACTGACGTGACGCGCACC

Downstream 100 bases:

>100_bases
CGGAGCGGCTGAAATACTGGTGGGCGGGATTGTCGGGGCGCGAACGCTGGCTGGTCGGTATCGCCGCGGTGCTGGCGCTC
GGTGTGCTCGGCTGGGGGTT

Product: general secretion pathway L

Products: NA

Alternate protein names: Type II Secretory Pathway Component PulL

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA
AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG
ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA
VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN
LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP

Sequences:

>Translated_377_residues
MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA
AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG
ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA
VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN
LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP
>Mature_377_residues
MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA
AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG
ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA
VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN
LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP

Specific function: Unknown

COG id: COG3297

COG function: function code U; Type II secretory pathway, component PulL

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39049; Mature: 39049

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPA
CEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEECHHHCCCCCCCCCEEEEECC
ADVPLRWFHYPDAAPAQAAAAARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAA
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEEEEECHH
MTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGGERIIRSADRAWASDPELDPL
HHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCE
IAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA
EECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFS
HHHHHHHHHHHEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
VPASALYDAMRDAPGVSLKNLSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPM
CCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGAGGQQMAHVTIRAVP
CCCCCCEEEEEEEEECC
>Mature Secondary Structure
MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPA
CEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEECHHHCCCCCCCCCEEEEECC
ADVPLRWFHYPDAAPAQAAAAARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAA
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEEEEECHH
MTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGGERIIRSADRAWASDPELDPL
HHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCE
IAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA
EECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFS
HHHHHHHHHHHEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
VPASALYDAMRDAPGVSLKNLSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPM
CCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGAGGQQMAHVTIRAVP
CCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA