Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485818
Identifier: 103485818
GI number: 103485818
Start: 329984
End: 331117
Strand: Direct
Name: 103485818
Synonym: Sala_0323
Alternate gene names: NA
Gene position: 329984-331117 (Clockwise)
Preceding gene: 103485817
Following gene: 103485819
Centisome position: 9.86
GC content: 72.84
Gene sequence:
>1134_bases TTGCTGATCTGGTTGCCGCGAGTGGCGGCGCTTGCGGACGCCGCCGCCGCGCCCGCGGCGTGGCTTCGCATCGACGACGG CGTTGTCGTCGACAGCGGGCAGGACGACGGCTGGGTCGCCGATTGGGAAAAGCAGGGCGACGATGGCCCCGACGACCGGT TGATTGCGCTGGCGCCCGCCGCCGACGTGCCGCTCCGTTGGTTCCACTATCCCGACGCCGCCCCCGCACAGGCCGCCGCC GCGGCGCGCATCGACGCGCTGAAGGCCAGCCTGGGCGATGCCGCCGGGCTGCATGTCGTTGCGGGGCAGCCCACCGAGAT GGGGCAAGCGGTGCCGGTGGCCGTGACGACGCACGCGGCGATGACCGGCTGGACCGGCTGGCTGGCGGCGCGCGGGCTGA CCGCAGCGGCGATCATTCCGGCCGCTGCTGCGTTGCCGCCGCCCGAAGCCGACAGCCTGTGGTCGGCCGAACTGGGCGGC GAGCGGATCATCCGCTCGGCCGACCGCGCCTGGGCGTCCGACCCCGAACTCGACCCGCTGATCGCGGGCAATCACGATGT CGCACCGCTCGATGCCGAAGCGATGCGCGAGGCGCTGTTGCTGACGCTCGCGGCGCCGCCGCTCGACCTGTTGAGCGGCG CGTGGAAGCCGAAGCGCCGCTGGGCGGTCGATCCGGCGATGCTGCGGCTCGCGAAACGGCTGGCGATCGCGCTGGTCGCC GTGAGCGTTGCGATTCCGATCGTCTACGCGCTGCGCCTGACCGCCGATACCAGCCGCGCCGATGACGCGGTGGTGGCGAT GGCGACAAGGGCCGGGGTCACGGCGTCCGATGCGAGCGCCGCGGAAACCGAGATCGACCGTCGGCTGGCGACCGCGGGGG GCGGGCCCCTCGCCTTTTCGGTGCCAGCATCGGCGCTCTACGACGCGATGCGCGATGCGCCGGGCGTGTCGCTCAAAAAC CTGTCGCACCGCACCGACGGCACGCTGACGACGACGCTCGCGGCGCCGCGCGTCGACGACATCAACCAGGTGCTGCTGGC GTTGCAGGCGCGTGGCTATCGCATCACGGCGCAGCCGATGGCGGGGGCCGGCGGACAGCAGATGGCCCATGTCACGATCC GGGCGGTGCCATGA
Upstream 100 bases:
>100_bases TCACTCATCGACGCCAATGGCGGCGCGCCGTCGGTCGGCACGGCCCCTCCGGTGATCGTGCGCCGCGACTGGGGCGAAAG CGACTGACGTGACGCGCACC
Downstream 100 bases:
>100_bases CGGAGCGGCTGAAATACTGGTGGGCGGGATTGTCGGGGCGCGAACGCTGGCTGGTCGGTATCGCCGCGGTGCTGGCGCTC GGTGTGCTCGGCTGGGGGTT
Product: general secretion pathway L
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulL
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP
Sequences:
>Translated_377_residues MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP >Mature_377_residues MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPAADVPLRWFHYPDAAPAQAAA AARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAAMTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGG ERIIRSADRAWASDPELDPLIAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFSVPASALYDAMRDAPGVSLKN LSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPMAGAGGQQMAHVTIRAVP
Specific function: Unknown
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39049; Mature: 39049
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPA CEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEECHHHCCCCCCCCCEEEEECC ADVPLRWFHYPDAAPAQAAAAARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAA CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEEEEECHH MTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGGERIIRSADRAWASDPELDPL HHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCE IAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA EECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFS HHHHHHHHHHHEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE VPASALYDAMRDAPGVSLKNLSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPM CCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC AGAGGQQMAHVTIRAVP CCCCCCEEEEEEEEECC >Mature Secondary Structure MLIWLPRVAALADAAAAPAAWLRIDDGVVVDSGQDDGWVADWEKQGDDGPDDRLIALAPA CEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEECHHHCCCCCCCCCEEEEECC ADVPLRWFHYPDAAPAQAAAAARIDALKASLGDAAGLHVVAGQPTEMGQAVPVAVTTHAA CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEEEEECHH MTGWTGWLAARGLTAAAIIPAAAALPPPEADSLWSAELGGERIIRSADRAWASDPELDPL HHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCE IAGNHDVAPLDAEAMREALLLTLAAPPLDLLSGAWKPKRRWAVDPAMLRLAKRLAIALVA EECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH VSVAIPIVYALRLTADTSRADDAVVAMATRAGVTASDASAAETEIDRRLATAGGGPLAFS HHHHHHHHHHHEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE VPASALYDAMRDAPGVSLKNLSHRTDGTLTTTLAAPRVDDINQVLLALQARGYRITAQPM CCHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC AGAGGQQMAHVTIRAVP CCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA