Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is outK [H]
Identifier: 103485817
GI number: 103485817
Start: 328966
End: 329970
Strand: Direct
Name: outK [H]
Synonym: Sala_0322
Alternate gene names: 103485817
Gene position: 328966-329970 (Clockwise)
Preceding gene: 103485816
Following gene: 103485818
Centisome position: 9.83
GC content: 70.15
Gene sequence:
>1005_bases ATGACCCCGGCACCGGGCGATCGCGGCGCGGCTTTGCTGAGCGTCCTGCTGCTCGTCGCGGTGATGGCGGTGATCGCGGC GACCGCGCTCGACCGGCTGACGCTCGCGACGCGGATCGCGGGCAGCGCGGCGACGGTCGATCAGGGACGCGCCTACAGCT TTGCCGCCGAACAGATTGCGCTTGGCAGGGTCGCCGATCTGGTCGGGCGCGATCCGGCGAAGCTGACGCTGGCGGGCGAC TGGCTGGGGCGCGATTTCGTGCTGCCATTGCCCGGTGGCGAGGGACGCGCGCGGCTGACCGACGCCAGCAATTGCTTCAA CCTCAACAGCCTGGTCGCCGAAACGCTGCCGGGGCGCTTGACGCAGCGCATGGGTGCGCAGCGGCAATTCGCCGCGTTGA TGACCCTGCTCGGCATCGAGGATGGCGAGGCGCAGGCAATCGCGGGCGCCGCGGCCGACTGGATCGACAGCGACAGCAAC GAAGGACGGCTCGGCGCCGAGGATAATGTCTACCGGTCGCTGCCCGGCGCCTATCTGCCTGCGAACCGCAAGATGGCGCA TGTCAGCGAACTGCGCGCGGTGCGCGGCGTCAGCGCCAAACTCTACGCGCAGCTGGAACCCTGGGTCTGCGTGCTGCCCA CGACCGACCCGGTGAAGCTCAATGTCAACACGCTCGCCGCCTGGCAGGCGCCGCTCGTCGCGATGCTGTGGCCCGGCGAA ATCGACGTCAGGGCCGCACGGGCGGCGCTAGCCGCGCGGCCCGCGGGCGGCTATGGCAGCAGCGTGCGATTCTGGGAGGC GTCGGCGTTCGATCGCCGCAAGCCGCCGGACGATGTCGCCGAACAGGCGGCGGTGACGAGCCGCTGGCTGGTGCTGACGA CGAATGTGACGATGGGGGACGGGTTTCTGACGGCAGTTTCACTCATCGACGCCAATGGCGGCGCGCCGTCGGTCGGCACG GCCCCTCCGGTGATCGTGCGCCGCGACTGGGGCGAAAGCGACTGA
Upstream 100 bases:
>100_bases TCGAGGTGCGGATCGACCGAACGGGCCGCCCGCCGCTGACGATGCTGTTCCTCACCGCGCCGACGCCATTGCCGCCGCCC GCCATCGCGGGAGAGGCGCC
Downstream 100 bases:
>100_bases CGTGACGCGCACCTTGCTGATCTGGTTGCCGCGAGTGGCGGCGCTTGCGGACGCCGCCGCCGCGCCCGCGGCGTGGCTTC GCATCGACGACGGCGTTGTC
Product: general secretion pathway protein K
Products: NA
Alternate protein names: Pectic enzymes secretion protein OUTK [H]
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MTPAPGDRGAALLSVLLLVAVMAVIAATALDRLTLATRIAGSAATVDQGRAYSFAAEQIALGRVADLVGRDPAKLTLAGD WLGRDFVLPLPGGEGRARLTDASNCFNLNSLVAETLPGRLTQRMGAQRQFAALMTLLGIEDGEAQAIAGAAADWIDSDSN EGRLGAEDNVYRSLPGAYLPANRKMAHVSELRAVRGVSAKLYAQLEPWVCVLPTTDPVKLNVNTLAAWQAPLVAMLWPGE IDVRAARAALAARPAGGYGSSVRFWEASAFDRRKPPDDVAEQAAVTSRWLVLTTNVTMGDGFLTAVSLIDANGGAPSVGT APPVIVRRDWGESD
Sequences:
>Translated_334_residues MTPAPGDRGAALLSVLLLVAVMAVIAATALDRLTLATRIAGSAATVDQGRAYSFAAEQIALGRVADLVGRDPAKLTLAGD WLGRDFVLPLPGGEGRARLTDASNCFNLNSLVAETLPGRLTQRMGAQRQFAALMTLLGIEDGEAQAIAGAAADWIDSDSN EGRLGAEDNVYRSLPGAYLPANRKMAHVSELRAVRGVSAKLYAQLEPWVCVLPTTDPVKLNVNTLAAWQAPLVAMLWPGE IDVRAARAALAARPAGGYGSSVRFWEASAFDRRKPPDDVAEQAAVTSRWLVLTTNVTMGDGFLTAVSLIDANGGAPSVGT APPVIVRRDWGESD >Mature_333_residues TPAPGDRGAALLSVLLLVAVMAVIAATALDRLTLATRIAGSAATVDQGRAYSFAAEQIALGRVADLVGRDPAKLTLAGDW LGRDFVLPLPGGEGRARLTDASNCFNLNSLVAETLPGRLTQRMGAQRQFAALMTLLGIEDGEAQAIAGAAADWIDSDSNE GRLGAEDNVYRSLPGAYLPANRKMAHVSELRAVRGVSAKLYAQLEPWVCVLPTTDPVKLNVNTLAAWQAPLVAMLWPGEI DVRAARAALAARPAGGYGSSVRFWEASAFDRRKPPDDVAEQAAVTSRWLVLTTNVTMGDGFLTAVSLIDANGGAPSVGTA PPVIVRRDWGESD
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes [H]
COG id: COG3156
COG function: function code U; Type II secretory pathway, component PulK
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP K family [H]
Homologues:
Organism=Escherichia coli, GI1789729, Length=242, Percent_Identity=31.404958677686, Blast_Score=102, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005628 [H]
Pfam domain/function: PF03934 GspK [H]
EC number: NA
Molecular weight: Translated: 35110; Mature: 34979
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAPGDRGAALLSVLLLVAVMAVIAATALDRLTLATRIAGSAATVDQGRAYSFAAEQIA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LGRVADLVGRDPAKLTLAGDWLGRDFVLPLPGGEGRARLTDASNCFNLNSLVAETLPGRL HHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCHHH TQRMGAQRQFAALMTLLGIEDGEAQAIAGAAADWIDSDSNEGRLGAEDNVYRSLPGAYLP HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC ANRKMAHVSELRAVRGVSAKLYAQLEPWVCVLPTTDPVKLNVNTLAAWQAPLVAMLWPGE CCCCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCEEEEHHHHHHHCCCEEEEECCCC IDVRAARAALAARPAGGYGSSVRFWEASAFDRRKPPDDVAEQAAVTSRWLVLTTNVTMGD CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCEEEEEEECEEECC GFLTAVSLIDANGGAPSVGTAPPVIVRRDWGESD CCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure TPAPGDRGAALLSVLLLVAVMAVIAATALDRLTLATRIAGSAATVDQGRAYSFAAEQIA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LGRVADLVGRDPAKLTLAGDWLGRDFVLPLPGGEGRARLTDASNCFNLNSLVAETLPGRL HHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHCCHHH TQRMGAQRQFAALMTLLGIEDGEAQAIAGAAADWIDSDSNEGRLGAEDNVYRSLPGAYLP HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC ANRKMAHVSELRAVRGVSAKLYAQLEPWVCVLPTTDPVKLNVNTLAAWQAPLVAMLWPGE CCCCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCEEEEHHHHHHHCCCEEEEECCCC IDVRAARAALAARPAGGYGSSVRFWEASAFDRRKPPDDVAEQAAVTSRWLVLTTNVTMGD CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCEEEEEEECEEECC GFLTAVSLIDANGGAPSVGTAPPVIVRRDWGESD CCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8326859 [H]