Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485808
Identifier: 103485808
GI number: 103485808
Start: 318409
End: 321102
Strand: Direct
Name: 103485808
Synonym: Sala_0313
Alternate gene names: NA
Gene position: 318409-321102 (Clockwise)
Preceding gene: 103485807
Following gene: 103485809
Centisome position: 9.52
GC content: 63.77
Gene sequence:
>2694_bases ATGACCAAGCGGCCGATCTTCGCCAGCCTGCTCCTCCTTAGCACCGCGCTTGTCGCTCCTGCCGCGCTTGCGCAGGGCAG CGGCGCCGATCCGGCGCCGGCCGCCGCCGACGAGCCCGTCGCCGACGCGGCCGCGCAGGACGAGGACGCCGATATTTCGA TTCCGGGCGGCGCCGACGCCGAGATCGTCGTCACCGGCCGCTTCACGCCCAATGTCGTCCGCGCGACGCCCGAAGTCGTT TCGGTGCTGTCGTCGGCCGACATTGCGCGGACCGGCGAGGGCGACATCGCCGGCTCGCTCCAGCGCGTGACCGGCCTGTC GGTCGTCGGCAATGGGTTCGTCTATGTCCGCGGCCTTGGCGACCGCTATTCGCTGGCGCTGCTCAACGGATCGCCGCTGC CCAGCCCCGAACCGCTGAAGCGCGTCGTTCCGCTCGACCTCTTTCCGTCGAACGTGATCGATTCGACGCTGGTGCAGAAA AGCTATTCGGCGAACTTCCCCGGCGAATTCGGCGGCGGCGTGATCAACCTCACGACCAAATCGACCCCGCGCGAAACCTT TCTGACCTTCTCGGGCGGCGTCGGCTGGGACAGCGAGACGACGAACGAGCTTGGCTATACCTATTATGGCAGCGACACCG ACTGGACGGGCTTCGACGATGGCACGCGCGATGTGCCGCCGCTCTTGAAGGCCGCCTTTGCCAGCGGCAAGCCGATCCTC GAAGGCGCCGATTTCACGCAGGACGATCTCGAGGCGATCCAGATGGAACTGGTCAACGCCGAGACGAGCCTGCTCCAGCA GAATGATCATATCCCGATCAACTGGTCGGCGGGGATCACCGGCGGCACGACGATCACGCTGCCCAACGGCGAGCTGGGTA TCATCGCCACCATGGGGATCAGCAACAAGTGGCGCACGCGCGACACGCTGCAACAAACGTCGCTGAACCAGGATCTCTCG GGCGATCCGCAGACGAGCTTCAACCGCGTCATCACCGACAACCGCATCGTCGTGAACGGGCTGCTTGGCTTCGGGCTCGA ACTGGGCGATCACAAGTTCCGCTGGACCAATTTGTTCATCCGCGACACGCTGAAGCAGGCGCGCCTCGGCCTCGGCGTCG ATCGCAACCAGTCCGAACGCGACATTCTGGAGCAGGACACGGCGTGGTACGAGCGTCAGCTCATCAACACGCAGCTGGTG GCCGAGTTCGATTTCGACCGGTTGCAGCTCGACCTGCGCGGCGGTTACGCCAATTCGCAGCGCGAGGCGCCCTATGAGCG CGGCTTCACCTATGTCCGCACCAACCTGCCGACCGAACAGGATCCGACGGGCGACAAGTTCGTCAACGACCTCGGCGGCA ACCGCGGCGATGCGACGATCGCCTTTTCGGACCTCACCGAAAATCTGTGGTCGGGCGGTGTCGATCTGTCCTATGAAGTG GCGCCGCGTATCACCGCGACGATCGGCTATGCCTATAGCGACACCAGCCGCACCGCCGTGCGCCGCGCCTTCCAGTTCCG CGGATCGAACCTGCCCGTCGAGGTCACGCAACTGCGCCCCGACTATCTCCTCTCCGACGCGACGATCCAGCTCTATGACA TCTCGCTGCTCGAAACCTCGGCGCAGGACGGCACCGCCGCCTTCGATGCGGCGCTGACGACGCACGCGGGCTATGGCCAG GTGCAGGCCGAGATCATTCCGGGGGTCAACATCAACGCGGGCGTCCGGTACGAGGATGCCAGGCAGACGGTGCGCCCGAT CGACCTGTTCAACACGGGCAGCAGCGCGATCGTCGCGACAAACCTCAACAATGATTATTGGCTCCCCGCGGTCACGCTGA CCTGGGAAGTCGCGCCCGACATGCAGCTGCGCATCAACGGGTCGAAGACGATCGCCCGCCCGCAGTTCCGCGAGCTGATC GCCCAAGTCTATCAGGATCCCGAATCGAACCGCGAGTTCCGCGGCAACCCGTCGCTGACCGACAGCGAGCTGTGGAATGC CGAGGTGCGGTACGAATGGTATTTCGATCGCGACCAGCGCTTCACGCTGGCCGGTTTCTACAAGTCGATCGACCGACCGA TCGAAACCTTCACCTCGATCAGCACCGACTCGGTCGCCAACTCCAGTTTCGCCAACGCGCCGAAGGCGACCCTCTATGGC GCCGAGGTCGAGGTGCAGAAATATGTCCCGCTCGATACGCTGTCCGACGCGCCCTTCTGGCAGAGCCGCCGCCTCGTGCT CATCGGCAACTACACCTATACCAAGTCGGAAATTAAGGTCGGCGACGACGATACGACGGTGATCAACGGCGTGACGCTGA GCGCCGCCGACTTCTTCTTCGACGGCTCGCCGCTGACCGGCCAGTCGGATCATATCGTCAATTTCCAGATCGGGATCGAG GATCAGGACAAATTGTCGCAACAAACGCTGCTTTTCACCTATGCCAGCCCGCGCGTCACCAGCCGCGGTCCGTCACAGCA GCCCGATATTCGCGAAAAACCGGGCATTTCGGTCGATTTCGTGGCGCGGCAGGGCGTGACCCTGCTCAACAAGGACATCG AACTGAAGTTCGAGGCGCGCAACCTGACCGGGCGCACCTATAAGGAAGTGCAGGAAGCGGGCGACAACCGCATCTTCCTC AACCGCTACAAGCTGGGGCGGACTTTCTCGCTCAGCGCGTCGCTGAAGTTCTGA
Upstream 100 bases:
>100_bases CATCCCGACGACCTGATCGCCCGCGATCGATTTTGGGGAGCGGGCTGCCGGCAACGGTCGGCCCGCTCCCTTCTTGACAA TATCCCTGGGGACATATTCC
Downstream 100 bases:
>100_bases CAAGGGCGAAGGCCTCTCTCCACAGGGGGAGGGGCCATTTCCGCCTCGCCGGACTCGCCGGGCCGACAAAAAACTGTAAT CTTCCCGTCAACTGATTGTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 897; Mature: 896
Protein sequence:
>897_residues MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVV SVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQK SYSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLS GDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLV AEFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQ VQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELI AQVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIE DQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFL NRYKLGRTFSLSASLKF
Sequences:
>Translated_897_residues MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVV SVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQK SYSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLS GDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLV AEFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQ VQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELI AQVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIE DQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFL NRYKLGRTFSLSASLKF >Mature_896_residues TKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADAEIVVTGRFTPNVVRATPEVVS VLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLGDRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKS YSANFPGEFGGGVINLTTKSTPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPILE GADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGISNKWRTRDTLQQTSLNQDLSG DPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFIRDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVA EFDFDRLQLDLRGGYANSQREAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEVA PRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETSAQDGTAAFDAALTTHAGYGQV QAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVATNLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIA QVYQDPESNREFRGNPSLTDSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYGA EVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFFDGSPLTGQSDHIVNFQIGIED QDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDFVARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLN RYKLGRTFSLSASLKF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98358; Mature: 98227
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC EIVVTGRFTPNVVRATPEVVSVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLG EEEEEECCCCCHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEECCCEEEEEECC DRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKSYSANFPGEFGGGVINLTTK CCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC STPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGI CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEEEEECC SNKWRTRDTLQQTSLNQDLSGDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFI CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEHHHCCEEECCCEEEEEEEHH RDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVAEFDFDRLQLDLRGGYANSQ HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCC REAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV CCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEEE APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETS CCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEEEEEECC AQDGTAAFDAALTTHAGYGQVQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVAT CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEHHHHHCCCCEEEECCCCCEEEEE NLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIAQVYQDPESNREFRGNPSLT ECCCCEEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC DSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG CHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFF CEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEECCEEEECCCCCEEEECEEEEEEHEEE DGSPLTGQSDHIVNFQIGIEDQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDF CCCCCCCCCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE VARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLNRYKLGRTFSLSASLKF EECCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECC >Mature Secondary Structure TKRPIFASLLLLSTALVAPAALAQGSGADPAPAAADEPVADAAAQDEDADISIPGGADA CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC EIVVTGRFTPNVVRATPEVVSVLSSADIARTGEGDIAGSLQRVTGLSVVGNGFVYVRGLG EEEEEECCCCCHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEECCCEEEEEECC DRYSLALLNGSPLPSPEPLKRVVPLDLFPSNVIDSTLVQKSYSANFPGEFGGGVINLTTK CCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC STPRETFLTFSGGVGWDSETTNELGYTYYGSDTDWTGFDDGTRDVPPLLKAAFASGKPIL CCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC EGADFTQDDLEAIQMELVNAETSLLQQNDHIPINWSAGITGGTTITLPNGELGIIATMGI CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEEEEECC SNKWRTRDTLQQTSLNQDLSGDPQTSFNRVITDNRIVVNGLLGFGLELGDHKFRWTNLFI CCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEHHHCCEEECCCEEEEEEEHH RDTLKQARLGLGVDRNQSERDILEQDTAWYERQLINTQLVAEFDFDRLQLDLRGGYANSQ HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCC REAPYERGFTYVRTNLPTEQDPTGDKFVNDLGGNRGDATIAFSDLTENLWSGGVDLSYEV CCCCHHHCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCEEEEE APRITATIGYAYSDTSRTAVRRAFQFRGSNLPVEVTQLRPDYLLSDATIQLYDISLLETS CCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCEEEEEEEEEEECC AQDGTAAFDAALTTHAGYGQVQAEIIPGVNINAGVRYEDARQTVRPIDLFNTGSSAIVAT CCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEHHHHHCCCCEEEECCCCCEEEEE NLNNDYWLPAVTLTWEVAPDMQLRINGSKTIARPQFRELIAQVYQDPESNREFRGNPSLT ECCCCEEEEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC DSELWNAEVRYEWYFDRDQRFTLAGFYKSIDRPIETFTSISTDSVANSSFANAPKATLYG CHHHCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEC AEVEVQKYVPLDTLSDAPFWQSRRLVLIGNYTYTKSEIKVGDDDTTVINGVTLSAADFFF CEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEECCEEEECCCCCEEEECEEEEEEHEEE DGSPLTGQSDHIVNFQIGIEDQDKLSQQTLLFTYASPRVTSRGPSQQPDIREKPGISVDF CCCCCCCCCCEEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE VARQGVTLLNKDIELKFEARNLTGRTYKEVQEAGDNRIFLNRYKLGRTFSLSASLKF EECCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA