Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485774
Identifier: 103485774
GI number: 103485774
Start: 276172
End: 277917
Strand: Direct
Name: 103485774
Synonym: Sala_0279
Alternate gene names: NA
Gene position: 276172-277917 (Clockwise)
Preceding gene: 103485773
Following gene: 103485775
Centisome position: 8.26
GC content: 70.56
Gene sequence:
>1746_bases ATGGACCAGGCGAAAACGAACGAAATGGACCCCGACGAGGTCGACCGGATCATCGCCGATGAGCTTCAGCGCCTGCTCGA ATCGCCCATGTTCACGCGCTCGCCGGTGTTGTCGCGGTTGCTGCAATTCCTTGTCGAACACCGGCTGCGCGGCGGGCGCA GCGCGCCCAAGGCCTATGCGATCGCGACCGAGGCGCTGGGGCGGAGCGAGGATTTCGACCCCGCGGTCGACAGCTATCCG CGCGTGATGGTCGGCCGGCTGCGGACGCTGCTCGACCGCTATTATTCCGAAACCGCGTGGGTCCACCGGCTGCGCGTGCC GCAGGGCAGCTACGAGGTGGTCGTCCAGCATCGCTCGTCACCTCCCGCCGCGCGCGCGGCCGAGGGACCGGACGGCGACG ATGACGTCAAGGCCGCAGCCGCAGCGGCTGGCGGCGATGCGGTGCCGCCGGCGGTCGCCAGGCCGGGCGGCGGCCGGTTC GGCCGGTGGATCGTCGCCCTGCTGCTTCTGGCGCTCGCGTTGCTCGCGCTCTGGGCGCTGCGCGGCGAAGCGCCGCGCCT GCTCGCGCGCGATGCCGTTCCCGAACCCTTGCTCGAGATCAGCGCCCCGGATTCAGGCAATCTGCCTGAATCGCGCGCGC TCGCGCGCGCGCTCGACGGCAGACTGCGCGACGGGCTGCGGCGCTTTGACCTGATCGAACTGCTCGCCGCGCACACGGCG GGCGGCGCAGCTCCACGCCCTGCCGACTACCGGCTCGACACCTCGCTCGTCCGCACGGTCGACGGGGTCGTCGACGTGAC GCTGGTGCTCAACCGCGTCGCCGACCAGCGCGCGATCTGGTCGCAGCAATTGCGGCTGGACCATTTCGACACGCCGGAGT TCACCGCTGTCGAGCCCGTCATCGCGCAGCTTGCGGGCGATTATGGCGTGATCGTGCGCGACCAGATCCGGCGCCAGCCC GATAATTATGCGCCGGGCTATCCCTGCCTCGCGCAGTTCAACCGGTTGCGCCAGATGCGCGACGCGGCCACGGCCAAGCG GGTCGTCAGCTGTCTGCGCGCGATGATCAAGGCCGACCCGCGCGATCCGGTCGCGCTTGCCGCGCTGTCGCTCGTGCGGT TCGGCGACTGGCAGCCGCAGCGCGGGACGCCCGCAGGCCGCGAAGCCTTTGCCGAGGCGCGCGCGCTGGCGCTGCGTGCC TATCGCGAAGATCCCGATTCCTCGGTCGGGCAGTTCGCGATGGCGCGCGCGAACTTTTACGCGGGCGACTGTGCGGCGGG CATTGCGATGGGCGACAGCGCGCGAGCGCTCAACCCCTATGATGCCGACATGGCCGGCTTCCTCGGTCTGTTCAAGCTGG CGTGCGACCATGCGGATGAGGGCGAGGAACTGCTGCGCCGTTCGCTGGCGCTCGACCCTTCCAATCCCGGCGTGCCTGCG GTGACGCTGGCTTTCATCCTGTCGCAGCGCGGCGAACAGGCGCAGGCGCAGGCGATCCTCGATCGAATGCCGTCGCCGAC CAACCTCGAGCCGCAATATCTGATGGTGCGGTCGGTCGTGCTGGCGCGACAGGGCGAGGTCGACGCGGCGCGCGCATTGT GGCGCCGCCTGCTCGCCTATACGCGCCAGCCCGCCGATGCGCCGCCCGAACAGGTGCTCGGCCGTTTCCTGATCACTCCG GCGGTGATCGCGCGTGCGTCGGCGGCGCTGCGCGAATCCGGCGTCGTCGGCCCTCCGGCGGGCTGA
Upstream 100 bases:
>100_bases TTGGCCGGCTTGTTACCGTTACGAAGGCGTTACAATGGGTGGGCGCGCCGGACGATTGGCGTATCTACCGTATCGCCCGC CGCGGGCATTTGAGGGTAGC
Downstream 100 bases:
>100_bases ACCGCCGCGCGCCGATTATTCGCGGTGCCCGGTCTTGCGCGCCGGGGCGGCGGCGCCTATTTTTGCGACGGGCGCCAGAG GGGCAGAAAGGGGCGCGCCC
Product: tetratricopeptide TPR_4
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MDQAKTNEMDPDEVDRIIADELQRLLESPMFTRSPVLSRLLQFLVEHRLRGGRSAPKAYAIATEALGRSEDFDPAVDSYP RVMVGRLRTLLDRYYSETAWVHRLRVPQGSYEVVVQHRSSPPAARAAEGPDGDDDVKAAAAAAGGDAVPPAVARPGGGRF GRWIVALLLLALALLALWALRGEAPRLLARDAVPEPLLEISAPDSGNLPESRALARALDGRLRDGLRRFDLIELLAAHTA GGAAPRPADYRLDTSLVRTVDGVVDVTLVLNRVADQRAIWSQQLRLDHFDTPEFTAVEPVIAQLAGDYGVIVRDQIRRQP DNYAPGYPCLAQFNRLRQMRDAATAKRVVSCLRAMIKADPRDPVALAALSLVRFGDWQPQRGTPAGREAFAEARALALRA YREDPDSSVGQFAMARANFYAGDCAAGIAMGDSARALNPYDADMAGFLGLFKLACDHADEGEELLRRSLALDPSNPGVPA VTLAFILSQRGEQAQAQAILDRMPSPTNLEPQYLMVRSVVLARQGEVDAARALWRRLLAYTRQPADAPPEQVLGRFLITP AVIARASAALRESGVVGPPAG
Sequences:
>Translated_581_residues MDQAKTNEMDPDEVDRIIADELQRLLESPMFTRSPVLSRLLQFLVEHRLRGGRSAPKAYAIATEALGRSEDFDPAVDSYP RVMVGRLRTLLDRYYSETAWVHRLRVPQGSYEVVVQHRSSPPAARAAEGPDGDDDVKAAAAAAGGDAVPPAVARPGGGRF GRWIVALLLLALALLALWALRGEAPRLLARDAVPEPLLEISAPDSGNLPESRALARALDGRLRDGLRRFDLIELLAAHTA GGAAPRPADYRLDTSLVRTVDGVVDVTLVLNRVADQRAIWSQQLRLDHFDTPEFTAVEPVIAQLAGDYGVIVRDQIRRQP DNYAPGYPCLAQFNRLRQMRDAATAKRVVSCLRAMIKADPRDPVALAALSLVRFGDWQPQRGTPAGREAFAEARALALRA YREDPDSSVGQFAMARANFYAGDCAAGIAMGDSARALNPYDADMAGFLGLFKLACDHADEGEELLRRSLALDPSNPGVPA VTLAFILSQRGEQAQAQAILDRMPSPTNLEPQYLMVRSVVLARQGEVDAARALWRRLLAYTRQPADAPPEQVLGRFLITP AVIARASAALRESGVVGPPAG >Mature_581_residues MDQAKTNEMDPDEVDRIIADELQRLLESPMFTRSPVLSRLLQFLVEHRLRGGRSAPKAYAIATEALGRSEDFDPAVDSYP RVMVGRLRTLLDRYYSETAWVHRLRVPQGSYEVVVQHRSSPPAARAAEGPDGDDDVKAAAAAAGGDAVPPAVARPGGGRF GRWIVALLLLALALLALWALRGEAPRLLARDAVPEPLLEISAPDSGNLPESRALARALDGRLRDGLRRFDLIELLAAHTA GGAAPRPADYRLDTSLVRTVDGVVDVTLVLNRVADQRAIWSQQLRLDHFDTPEFTAVEPVIAQLAGDYGVIVRDQIRRQP DNYAPGYPCLAQFNRLRQMRDAATAKRVVSCLRAMIKADPRDPVALAALSLVRFGDWQPQRGTPAGREAFAEARALALRA YREDPDSSVGQFAMARANFYAGDCAAGIAMGDSARALNPYDADMAGFLGLFKLACDHADEGEELLRRSLALDPSNPGVPA VTLAFILSQRGEQAQAQAILDRMPSPTNLEPQYLMVRSVVLARQGEVDAARALWRRLLAYTRQPADAPPEQVLGRFLITP AVIARASAALRESGVVGPPAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63107; Mature: 63107
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQAKTNEMDPDEVDRIIADELQRLLESPMFTRSPVLSRLLQFLVEHRLRGGRSAPKAYA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH IATEALGRSEDFDPAVDSYPRVMVGRLRTLLDRYYSETAWVHRLRVPQGSYEVVVQHRSS HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC PPAARAAEGPDGDDDVKAAAAAAGGDAVPPAVARPGGGRFGRWIVALLLLALALLALWAL CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RGEAPRLLARDAVPEPLLEISAPDSGNLPESRALARALDGRLRDGLRRFDLIELLAAHTA CCCCCHHHHHHCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGAAPRPADYRLDTSLVRTVDGVVDVTLVLNRVADQRAIWSQQLRLDHFDTPEFTAVEPV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH IAQLAGDYGVIVRDQIRRQPDNYAPGYPCLAQFNRLRQMRDAATAKRVVSCLRAMIKADP HHHHCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RDPVALAALSLVRFGDWQPQRGTPAGREAFAEARALALRAYREDPDSSVGQFAMARANFY CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC AGDCAAGIAMGDSARALNPYDADMAGFLGLFKLACDHADEGEELLRRSLALDPSNPGVPA CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHH VTLAFILSQRGEQAQAQAILDRMPSPTNLEPQYLMVRSVVLARQGEVDAARALWRRLLAY HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH TRQPADAPPEQVLGRFLITPAVIARASAALRESGVVGPPAG HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MDQAKTNEMDPDEVDRIIADELQRLLESPMFTRSPVLSRLLQFLVEHRLRGGRSAPKAYA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH IATEALGRSEDFDPAVDSYPRVMVGRLRTLLDRYYSETAWVHRLRVPQGSYEVVVQHRSS HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC PPAARAAEGPDGDDDVKAAAAAAGGDAVPPAVARPGGGRFGRWIVALLLLALALLALWAL CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RGEAPRLLARDAVPEPLLEISAPDSGNLPESRALARALDGRLRDGLRRFDLIELLAAHTA CCCCCHHHHHHCCCCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGAAPRPADYRLDTSLVRTVDGVVDVTLVLNRVADQRAIWSQQLRLDHFDTPEFTAVEPV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH IAQLAGDYGVIVRDQIRRQPDNYAPGYPCLAQFNRLRQMRDAATAKRVVSCLRAMIKADP HHHHCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RDPVALAALSLVRFGDWQPQRGTPAGREAFAEARALALRAYREDPDSSVGQFAMARANFY CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC AGDCAAGIAMGDSARALNPYDADMAGFLGLFKLACDHADEGEELLRRSLALDPSNPGVPA CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHH VTLAFILSQRGEQAQAQAILDRMPSPTNLEPQYLMVRSVVLARQGEVDAARALWRRLLAY HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH TRQPADAPPEQVLGRFLITPAVIARASAALRESGVVGPPAG HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA