Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109192
Identifier: 222109192
GI number: 222109192
Start: 80698
End: 81372
Strand: Reverse
Name: 222109192
Synonym: Avi_9611
Alternate gene names: NA
Gene position: 81372-80698 (Counterclockwise)
Preceding gene: 222109193
Following gene: 222109191
Centisome position: 62.39
GC content: 48.89
Gene sequence:
>675_bases ATGGAAGTCGCAGAAGGAGAATTCAAACCTGCCTTTCCTATCAAGCCTGCCCAGCAGCTGGTGTTCGTGCACATCCCCAA ATGTGGTGGTACGTCAATGCACCAATTCTTAGCCAACGCGAAGAAGGTGCAGCCGGAACCAGAGCTTTCGACAATTCTTG CGGGCTATTGTGAACCCGCGCTTCATAAACACTCTAAGGCGGCGGTTATTCGTGATCTCGTCGGCCCTGCGTTGTGGCAG ACCATCTTCACTTTTTCAGTCGTGCGGAACCCGTGGGACCTAATGCTTTCGAGTTATCGTTGGTGGCTTCAAAAAGCCGG CAGATTTTCAAGTCTGCGCGCACAAGCGGATGAGGTGGCGGATCTAGGAAGCTTCGAAGGTTTCCTAAAGTCTGATTTTG GGGGCAATCGCATAAACGAGTGTGAAGGCGATATCCTAAGCTGGCTATCGGATGAGAATGGACAAGAGATTGTCGACTTT GTAGGCCGACTTGAAGATATAGAGCAAGCATTACAAAATGTATTCGAACGCGCGGGGTTGGCCGGGTATTCTGAATTTCC ACGACTTAACTCTACCGTTAGAGGTGGATACCAAGACTATTACAATGCAGAAACAAAGCGCTTAATACAAACCCGCTTCC AAGCAACTATCGACCGCTTTGAATATCAGTTCTAA
Upstream 100 bases:
>100_bases TCGGTTCCCGCGCTTTGCAACGAAGGCTTGGTGCGGAGCTTCAGAAACTGAGGTTTAGTTGTCGAATAAGCCGCTGCGAG GGGCTGGAAAGGATAGCTTT
Downstream 100 bases:
>100_bases ATAGACACCACGGAAATCTGATCATAAAAAAGAACCGATACCTTTGGAGTTCTAGTGAGCATGTCGTCCGAAGTGAGCTC TGAAGGACTTTTCGGTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MEVAEGEFKPAFPIKPAQQLVFVHIPKCGGTSMHQFLANAKKVQPEPELSTILAGYCEPALHKHSKAAVIRDLVGPALWQ TIFTFSVVRNPWDLMLSSYRWWLQKAGRFSSLRAQADEVADLGSFEGFLKSDFGGNRINECEGDILSWLSDENGQEIVDF VGRLEDIEQALQNVFERAGLAGYSEFPRLNSTVRGGYQDYYNAETKRLIQTRFQATIDRFEYQF
Sequences:
>Translated_224_residues MEVAEGEFKPAFPIKPAQQLVFVHIPKCGGTSMHQFLANAKKVQPEPELSTILAGYCEPALHKHSKAAVIRDLVGPALWQ TIFTFSVVRNPWDLMLSSYRWWLQKAGRFSSLRAQADEVADLGSFEGFLKSDFGGNRINECEGDILSWLSDENGQEIVDF VGRLEDIEQALQNVFERAGLAGYSEFPRLNSTVRGGYQDYYNAETKRLIQTRFQATIDRFEYQF >Mature_224_residues MEVAEGEFKPAFPIKPAQQLVFVHIPKCGGTSMHQFLANAKKVQPEPELSTILAGYCEPALHKHSKAAVIRDLVGPALWQ TIFTFSVVRNPWDLMLSSYRWWLQKAGRFSSLRAQADEVADLGSFEGFLKSDFGGNRINECEGDILSWLSDENGQEIVDF VGRLEDIEQALQNVFERAGLAGYSEFPRLNSTVRGGYQDYYNAETKRLIQTRFQATIDRFEYQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25423; Mature: 25423
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVAEGEFKPAFPIKPAQQLVFVHIPKCGGTSMHQFLANAKKVQPEPELSTILAGYCEPA CCCCCCCCCCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LHKHSKAAVIRDLVGPALWQTIFTFSVVRNPWDLMLSSYRWWLQKAGRFSSLRAQADEVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DLGSFEGFLKSDFGGNRINECEGDILSWLSDENGQEIVDFVGRLEDIEQALQNVFERAGL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AGYSEFPRLNSTVRGGYQDYYNAETKRLIQTRFQATIDRFEYQF CCCHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEVAEGEFKPAFPIKPAQQLVFVHIPKCGGTSMHQFLANAKKVQPEPELSTILAGYCEPA CCCCCCCCCCCCCCCHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LHKHSKAAVIRDLVGPALWQTIFTFSVVRNPWDLMLSSYRWWLQKAGRFSSLRAQADEVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DLGSFEGFLKSDFGGNRINECEGDILSWLSDENGQEIVDFVGRLEDIEQALQNVFERAGL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC AGYSEFPRLNSTVRGGYQDYYNAETKRLIQTRFQATIDRFEYQF CCCHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA