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The map label for this gene is sdhC [H]

Identifier: 159185307

GI number: 159185307

Start: 2630977

End: 2631369

Strand: Reverse

Name: sdhC [H]

Synonym: Atu2645

Alternate gene names: 159185307

Gene position: 2631369-2630977 (Counterclockwise)

Preceding gene: 15889903

Following gene: 15889900

Centisome position: 92.6

GC content: 58.02

Gene sequence:

>393_bases
ATGGCGAATGTGACAAATAACCGGCCTCTGTCGCCGCATCTTCAAATTTACAAGCCTATCCCGACGATGGTTGCATCCAT
CGTGCACCGCATCACGGGCGGGGCGCTTTATTTCGGGACGCTTCTGGTCGCCTGGTGGCTGATCGCGCTTGCTTCGGGCC
CTGCCTATTACGACTGGGTCAACTGGGCGATGGGCACGATCATCGGCAGGCTCATCCTGATCGGCTATACCTGGGCTCTG
GTTCACCACATGCTGGGCGGTCTTCGCCACTTCATGTGGGATTTGGGTCATGGCTTCGACAAGCACTTTACCACCAAGCT
GGCAAAGGCCTCGTGGGTCGCGTCGATCTGTCTGACCGCGCTGATCTGGGTCATTGTCCTGATCGTGCGCTGA

Upstream 100 bases:

>100_bases
TAAACGTCGCGGTTGGTGCAATGCACATTCTTTCGTCATGTGCTGTTGCTTGGGGGCGTCCTGTCTGAATGGACGCACGG
GAAAACGCCGCGAGGTTCTG

Downstream 100 bases:

>100_bases
GGAGATTTTTTCATGGATATGCGTACACCTCTCGGAAAGGTTCGCGGTCTGGGCTCCGCCAAGGAAGGCACCGACCATTT
CCTGCGCCAGCGCGTCACCG

Product: succinate dehydrogenase cytochrome B-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWVNWAMGTIIGRLILIGYTWAL
VHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTALIWVIVLIVR

Sequences:

>Translated_130_residues
MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWVNWAMGTIIGRLILIGYTWAL
VHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTALIWVIVLIVR
>Mature_129_residues
ANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWVNWAMGTIIGRLILIGYTWALV
HHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTALIWVIVLIVR

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=126, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14624; Mature: 14492

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWV
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
NWAMGTIIGRLILIGYTWALVHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LIWVIVLIVR
HHHHHHHHCC
>Mature Secondary Structure 
ANVTNNRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWV
CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
NWAMGTIIGRLILIGYTWALVHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LIWVIVLIVR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA