Click here to switch to the map view.

The map label for this gene is sdhD [H]

Identifier: 15889900

GI number: 15889900

Start: 2630584

End: 2630964

Strand: Reverse

Name: sdhD [H]

Synonym: Atu2644

Alternate gene names: 15889900

Gene position: 2630964-2630584 (Counterclockwise)

Preceding gene: 159185307

Following gene: 15889899

Centisome position: 92.59

GC content: 55.91

Gene sequence:

>381_bases
ATGGATATGCGTACACCTCTCGGAAAGGTTCGCGGTCTGGGCTCCGCCAAGGAAGGCACCGACCATTTCCTGCGCCAGCG
CGTCACCGCGGTCGCCAACGTTCCGCTGCTGATCTTCTTCGTGATCTTCCTCATCAAATATGCCGGTGCGCCTTATCCGG
AAGTCGTCGCCGCGCTGTCGAACCCGCTCGTTGCGGTCATCATGGCTCTGGTGCTGGTGTCCGGCCTCATCCACATGAAG
CTCGGCATGCAGGTCATCATCGAAGACTACGTTCACGCCGAGGTTTCGAAGCTCGTTCTTCTGATGCTCAATACGTTTTT
CGCGATTCTGATTGGCGGTCTTTCCATCTTCGCCATTCTGAAAATCGCATTCGCAGGATAA

Upstream 100 bases:

>100_bases
CTTTACCACCAAGCTGGCAAAGGCCTCGTGGGTCGCGTCGATCTGTCTGACCGCGCTGATCTGGGTCATTGTCCTGATCG
TGCGCTGAGGAGATTTTTTC

Downstream 100 bases:

>100_bases
GTCCGCCATGGCATCGATCAGTTCACCTTCCCAGAATGGCAAGGCCTACACCTATGTCGATCACTCCTATGACGTGATCG
TGGTGGGCGCCGGTGGCGCC

Product: succinate dehydrogenase hydrophobic membrane anchor

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALSNPLVAVIMALVLVSGLIHMK
LGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAILKIAFAG

Sequences:

>Translated_126_residues
MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALSNPLVAVIMALVLVSGLIHMK
LGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAILKIAFAG
>Mature_126_residues
MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALSNPLVAVIMALVLVSGLIHMK
LGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAILKIAFAG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13624; Mature: 13624

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALS
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
NPLVAVIMALVLVSGLIHMKLGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAFAG
HHHHCC
>Mature Secondary Structure
MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALS
CCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
NPLVAVIMALVLVSGLIHMKLGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAFAG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA