| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is pfeA [H]
Identifier: 159185142
GI number: 159185142
Start: 2258667
End: 2260907
Strand: Direct
Name: pfeA [H]
Synonym: Atu2287
Alternate gene names: 159185142
Gene position: 2258667-2260907 (Clockwise)
Preceding gene: 15889560
Following gene: 15889565
Centisome position: 79.49
GC content: 60.11
Gene sequence:
>2241_bases ATGTCCATCTCGCGCACACATTCCGCGCTGCTTTTGTGCACTGCCATTTCTCTTCTTCCCCTTGCCGGGCCTGCGCGAGC GCAGGATGCCGCTTCGCAGGAAAACGGCACGACCACGCTCGAAAAGATCGTGGTGAAAGGCAAACGCGTCAAAAGCGCCA ACGCCGCAGCAGATACGCCGCTGGCAAGCCAGACGACGGCAGAGGACATCCGCAAGAAGGACATTGGCAGCATAAAGGAT CTCGGAAACACCACCGAACCGGGCGTCGACTATGTGGATTCCAAGCCGGGTCGTCCGGGCGGATTGTTCATTCGAGGCCT CGGCGGCGCCCGTGTCGTGACGCTGATCGACAATATTCCCGTTCCCTATTTCAACAATTTCGCCCGTCAGGGCCAGGCCA CGACCACCCTTAGCGACACGAGTTCGAGCTTTGATTTCTCATCGCTTTCGTCTGTAGACGTGGTGCGCGGCGCCGATTCC AGCCGCATCGGCTCGGGCGCACTCGGTGGCGCGCTGGTGCTGCGCACGCTCGAGCCGGAAGACCTGATCGGCGAAGGCAA GGATTGGGGTGGCGTCGCCAAAACCAGCTATGACAGCGAAGACCGAAGCGTCGGCGGATCGCTCGCCGTCGCCAAGAAGA TCGAGAACACCTCGGTCCTGTTCCAGGGCTCCTATAAGCGCGGCAATGAGACGGACAACAGGGGCACGGCGGATATCTAC GGAACGCGCCGCACCAAGCCCAACCCTGCCGACACCTATGAAAGCAACCTGATGTTCAAGATCCGCCAGGATCTGGAAGG TGGCCACCGCATCGGCCTGACGGCCGAGCGTTATTCGCTCAGAAACCGCAGCGACATGAAGACGCTGCAAGGCGTCAGCG TCTCGGGTTCGACCTACCGTATCGGCGACTACCGGGGTTATGAGGATACCGAGCGCGACCGTGTATCGCTCGATTACGAA TACGAGGCTCCCTCGACCGATGGCGTGATCGATGCCGCTAATCTCTCGCTTTACTGGACACGTCTGTCCAAGGAATCCGG CGCCGGCGACCGCCTGACCAACAATTCGCTCTACATCCGCGAAGACAGCATGCGCAACAGCGCATTCGGCATCGTCGGCG GCCTCGAATCCGGTTTCGAGCTTGGCGGCGTGCAGCATACGGTCCGTTTCGGCGGCAACGCCATGACGACCGATTTCAGC CAGGAGCTTTTCGCCAACACGGCCGGAGTGACGTCGTCATCGCAGTCGGACATGCCTGATGTGAGCGGCAAGAGCCTCGG CCTTTATCTCGATGACGAGATCGCCTTCGGCAACGGTTTCCGCCTGACCCCCGGCCTGCGCTTCGATTCCTACGATTACG ATCCTGACGGTTCCGTATCCAGCAACAGCGGTTACCGAACCTTCGGCCTGCCGAGCGGCAATAGCGGCTCGCGCTTCTCG CCGAAACTGCTTGCAACCTATGACGTCACGCCGGAACTGCAGCTCTTCGCACAGTGGTCGATGGCCTATCGCGCCCCCAC GATCAACGAACTGTATCTGAACTTCTCGAACATCAGCTCCGGTTACGCCGTTGTCGGCAACTCCGCCCTCAATCCCGAGA CCAGCAATGGTTTCGAAATCGGCGCGAACTATGCATCCGGCGACCTGACGGGGAGCCTGACGCTGTTCCACAACAAATAC AAGGACTTCATCGAGCAATATACCACCTCGACGACACTGTTCCCCGGCTTCGGCGGCAGGGGCAATGGCTCGCTCTTCAC CTATCGCAACCGTAACAATGTCGAAATCTCCGGTGTCGAAGCCAAGGTCCGCAAGGAACTGGCGAATGGCTTCTTCGCGC ATGCTTCGCTGGCTTATGCCTATGGCAAGGATACCGACACCAACGAGTTCATCCGCACGGTGGCGCCGTTCAAGTCGATC CTTGGCGTCGGCTACGCACAGGAGGTCTGGGGCACGGAACTGACCGGCGTCTTCTCATCCGGCATGCGGGACGACGGGGT GGCCAGCACTTTCGATGCCCCCGGCTACGGCGTCTTCAACCTGACCGGCTGGTGGGAGCCGGAACAGACCAAGGGTCTGC GCATCCAGGCGGGTGTCTACAACCTGTTCGACAGGAAATACTGGAATGGGGTCGGCGTCCGCGACGTGAACCCGAATTCT GTCAGCACCGTCAACCAGCCGGTCGATTTCTACACGGAAGCGGGCCGCACCTTCAAAATCTCCCTCACCCAGAAGTTCTA A
Upstream 100 bases:
>100_bases TCGGCTTGCCCGTAACACATCAGACCATGTCCAGCCGCGCTTGAGCGCGGCGCGTTTTTGCGCGCCGTGGCTTCTTTGCG CGCATATCCGGGGGTATTTA
Downstream 100 bases:
>100_bases ATCCGGGCAAAAAATCATCTCCAGTGGGCGGCCCCAGGGTCGCCCTTTTTTGTCAGCGGCAATAGAGATAGCCGCCTTTT CGCTCCAGCACGTCGAGATG
Product: outer membrane heme receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 746; Mature: 745
Protein sequence:
>746_residues MSISRTHSALLLCTAISLLPLAGPARAQDAASQENGTTTLEKIVVKGKRVKSANAAADTPLASQTTAEDIRKKDIGSIKD LGNTTEPGVDYVDSKPGRPGGLFIRGLGGARVVTLIDNIPVPYFNNFARQGQATTTLSDTSSSFDFSSLSSVDVVRGADS SRIGSGALGGALVLRTLEPEDLIGEGKDWGGVAKTSYDSEDRSVGGSLAVAKKIENTSVLFQGSYKRGNETDNRGTADIY GTRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAERYSLRNRSDMKTLQGVSVSGSTYRIGDYRGYEDTERDRVSLDYE YEAPSTDGVIDAANLSLYWTRLSKESGAGDRLTNNSLYIREDSMRNSAFGIVGGLESGFELGGVQHTVRFGGNAMTTDFS QELFANTAGVTSSSQSDMPDVSGKSLGLYLDDEIAFGNGFRLTPGLRFDSYDYDPDGSVSSNSGYRTFGLPSGNSGSRFS PKLLATYDVTPELQLFAQWSMAYRAPTINELYLNFSNISSGYAVVGNSALNPETSNGFEIGANYASGDLTGSLTLFHNKY KDFIEQYTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVEAKVRKELANGFFAHASLAYAYGKDTDTNEFIRTVAPFKSI LGVGYAQEVWGTELTGVFSSGMRDDGVASTFDAPGYGVFNLTGWWEPEQTKGLRIQAGVYNLFDRKYWNGVGVRDVNPNS VSTVNQPVDFYTEAGRTFKISLTQKF
Sequences:
>Translated_746_residues MSISRTHSALLLCTAISLLPLAGPARAQDAASQENGTTTLEKIVVKGKRVKSANAAADTPLASQTTAEDIRKKDIGSIKD LGNTTEPGVDYVDSKPGRPGGLFIRGLGGARVVTLIDNIPVPYFNNFARQGQATTTLSDTSSSFDFSSLSSVDVVRGADS SRIGSGALGGALVLRTLEPEDLIGEGKDWGGVAKTSYDSEDRSVGGSLAVAKKIENTSVLFQGSYKRGNETDNRGTADIY GTRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAERYSLRNRSDMKTLQGVSVSGSTYRIGDYRGYEDTERDRVSLDYE YEAPSTDGVIDAANLSLYWTRLSKESGAGDRLTNNSLYIREDSMRNSAFGIVGGLESGFELGGVQHTVRFGGNAMTTDFS QELFANTAGVTSSSQSDMPDVSGKSLGLYLDDEIAFGNGFRLTPGLRFDSYDYDPDGSVSSNSGYRTFGLPSGNSGSRFS PKLLATYDVTPELQLFAQWSMAYRAPTINELYLNFSNISSGYAVVGNSALNPETSNGFEIGANYASGDLTGSLTLFHNKY KDFIEQYTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVEAKVRKELANGFFAHASLAYAYGKDTDTNEFIRTVAPFKSI LGVGYAQEVWGTELTGVFSSGMRDDGVASTFDAPGYGVFNLTGWWEPEQTKGLRIQAGVYNLFDRKYWNGVGVRDVNPNS VSTVNQPVDFYTEAGRTFKISLTQKF >Mature_745_residues SISRTHSALLLCTAISLLPLAGPARAQDAASQENGTTTLEKIVVKGKRVKSANAAADTPLASQTTAEDIRKKDIGSIKDL GNTTEPGVDYVDSKPGRPGGLFIRGLGGARVVTLIDNIPVPYFNNFARQGQATTTLSDTSSSFDFSSLSSVDVVRGADSS RIGSGALGGALVLRTLEPEDLIGEGKDWGGVAKTSYDSEDRSVGGSLAVAKKIENTSVLFQGSYKRGNETDNRGTADIYG TRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAERYSLRNRSDMKTLQGVSVSGSTYRIGDYRGYEDTERDRVSLDYEY EAPSTDGVIDAANLSLYWTRLSKESGAGDRLTNNSLYIREDSMRNSAFGIVGGLESGFELGGVQHTVRFGGNAMTTDFSQ ELFANTAGVTSSSQSDMPDVSGKSLGLYLDDEIAFGNGFRLTPGLRFDSYDYDPDGSVSSNSGYRTFGLPSGNSGSRFSP KLLATYDVTPELQLFAQWSMAYRAPTINELYLNFSNISSGYAVVGNSALNPETSNGFEIGANYASGDLTGSLTLFHNKYK DFIEQYTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVEAKVRKELANGFFAHASLAYAYGKDTDTNEFIRTVAPFKSIL GVGYAQEVWGTELTGVFSSGMRDDGVASTFDAPGYGVFNLTGWWEPEQTKGLRIQAGVYNLFDRKYWNGVGVRDVNPNSV STVNQPVDFYTEAGRTFKISLTQKF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=307, Percent_Identity=26.7100977198697, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1786798, Length=813, Percent_Identity=21.4022140221402, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80661; Mature: 80530
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRTHSALLLCTAISLLPLAGPARAQDAASQENGTTTLEKIVVKGKRVKSANAAADTP CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC LASQTTAEDIRKKDIGSIKDLGNTTEPGVDYVDSKPGRPGGLFIRGLGGARVVTLIDNIP CCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC VPYFNNFARQGQATTTLSDTSSSFDFSSLSSVDVVRGADSSRIGSGALGGALVLRTLEPE CCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCH DLIGEGKDWGGVAKTSYDSEDRSVGGSLAVAKKIENTSVLFQGSYKRGNETDNRGTADIY HHHCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE GTRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAERYSLRNRSDMKTLQGVSVSGSTYR ECCCCCCCCCCCCCCCEEEEEEHHCCCCCEECEEHHHHHCCCCCHHHHHCCCEECCCEEE IGDYRGYEDTERDRVSLDYEYEAPSTDGVIDAANLSLYWTRLSKESGAGDRLTNNSLYIR ECCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEEE EDSMRNSAFGIVGGLESGFELGGVQHTVRFGGNAMTTDFSQELFANTAGVTSSSQSDMPD ECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCEECCHHHHHHHHHHCCCCCCCCCCCCC VSGKSLGLYLDDEIAFGNGFRLTPGLRFDSYDYDPDGSVSSNSGYRTFGLPSGNSGSRFS CCCCEEEEEEECCEECCCCEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC PKLLATYDVTPELQLFAQWSMAYRAPTINELYLNFSNISSGYAVVGNSALNPETSNGFEI CCEEEEECCCCCHHHHEEHHHHHCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEE GANYASGDLTGSLTLFHNKYKDFIEQYTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVE CCEECCCCCCEEEEEEHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCEEEECHH AKVRKELANGFFAHASLAYAYGKDTDTNEFIRTVAPFKSILGVGYAQEVWGTELTGVFSS HHHHHHHHCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHC GMRDDGVASTFDAPGYGVFNLTGWWEPEQTKGLRIQAGVYNLFDRKYWNGVGVRDVNPNS CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEECCCCC VSTVNQPVDFYTEAGRTFKISLTQKF CCCCCCCHHHHHCCCCEEEEEEEECC >Mature Secondary Structure SISRTHSALLLCTAISLLPLAGPARAQDAASQENGTTTLEKIVVKGKRVKSANAAADTP CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC LASQTTAEDIRKKDIGSIKDLGNTTEPGVDYVDSKPGRPGGLFIRGLGGARVVTLIDNIP CCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC VPYFNNFARQGQATTTLSDTSSSFDFSSLSSVDVVRGADSSRIGSGALGGALVLRTLEPE CCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCH DLIGEGKDWGGVAKTSYDSEDRSVGGSLAVAKKIENTSVLFQGSYKRGNETDNRGTADIY HHHCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE GTRRTKPNPADTYESNLMFKIRQDLEGGHRIGLTAERYSLRNRSDMKTLQGVSVSGSTYR ECCCCCCCCCCCCCCCEEEEEEHHCCCCCEECEEHHHHHCCCCCHHHHHCCCEECCCEEE IGDYRGYEDTERDRVSLDYEYEAPSTDGVIDAANLSLYWTRLSKESGAGDRLTNNSLYIR ECCCCCCCCCCCCEEEEEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCEEEEE EDSMRNSAFGIVGGLESGFELGGVQHTVRFGGNAMTTDFSQELFANTAGVTSSSQSDMPD ECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCEECCHHHHHHHHHHCCCCCCCCCCCCC VSGKSLGLYLDDEIAFGNGFRLTPGLRFDSYDYDPDGSVSSNSGYRTFGLPSGNSGSRFS CCCCEEEEEEECCEECCCCEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC PKLLATYDVTPELQLFAQWSMAYRAPTINELYLNFSNISSGYAVVGNSALNPETSNGFEI CCEEEEECCCCCHHHHEEHHHHHCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEE GANYASGDLTGSLTLFHNKYKDFIEQYTTSTTLFPGFGGRGNGSLFTYRNRNNVEISGVE CCEECCCCCCEEEEEEHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCEEEECHH AKVRKELANGFFAHASLAYAYGKDTDTNEFIRTVAPFKSILGVGYAQEVWGTELTGVFSS HHHHHHHHCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHC GMRDDGVASTFDAPGYGVFNLTGWWEPEQTKGLRIQAGVYNLFDRKYWNGVGVRDVNPNS CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEECCCCC VSTVNQPVDFYTEAGRTFKISLTQKF CCCCCCCHHHHHCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]