Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is trpE(G) [H]
Identifier: 15889565
GI number: 15889565
Start: 2262145
End: 2264334
Strand: Direct
Name: trpE(G) [H]
Synonym: Atu2289
Alternate gene names: 15889565
Gene position: 2262145-2264334 (Clockwise)
Preceding gene: 159185142
Following gene: 159185143
Centisome position: 79.61
GC content: 60.32
Gene sequence:
>2190_bases ATGGTAACGATCATTCAGGATGACGGAGCGGAGACCTACGAGACGAAAGGCGGCATCCAGGTCAGCCGAAAGCGCCGGCC CACCGATTATGCCAACGCCATCGATAATTACATCGAAAAGCTTGATTCCCATCGCGGCGCGGTTTTTTCGTCCAACTATG AATATCCGGGCCGTTACACCCGCTGGGATACGGCCATCGTCGATCCGCCGCTCGGCATTTCCTGTTTTGGCCGCAAGATG TGGATCGAAGCCTATAATGGCCGCGGCGAAGTGCTGCTCGATTTCATTACGGAAAAGCTGAAGGCGACACCCGATCTCAC CCTCGGCGCTTCCTCGACCCGCCGGCTCGATCTTACCGTCAACGAACCGGACCGTGTCTTCACCGAAGAAGAACGCTCGA AAATCCCGACGGTCTTCACCGCTCTCAGAGCCATCGTCGACCTCTTCTATTCGAGCGCGGATTCGGCCATCGGCCTGTTC GGTGCCTTCGGTTACGATCTCGCCTTCCAGTTCGACGCGATCAAGCTTTCGCTGGCGCGTCCGGAAGACCAGCGTGACAT GGTGCTGTTTCTGCCCGATGAAATCCTCGTCGTTGATCACTATTCCGCCAAGGCCTGGATCGACCGTTACGATTTCGAGA AGGACGGCATGACGACGGACGGCAAATCCTCCGACATTACCCCCGATCCCTTCAAGACCACCGATACCATCCCGCCCAAG GGCGATCACCGTCCCGGCGAATATTCCGAGCTTGTGGTGAAGGCCAAGGAAAGCTTCCGCCGCGGCGACCTGTTCGAGGT CGTTCCCGGCCAGAAATTCATGGAGCGTTGCGAAAGCAATCCGTCGGCGATTTCCCGCCGCCTGAAGGCGATCAACCCGT CGCCCTATTCCTTCTTCATCAATCTCGGCGATCAGGAATATCTGGTCGGCGCCTCGCCGGAAATGTTCGTGCGCGTCTCC GGCCGTCGCATCGAGACCTGCCCGATATCAGGCACCATCAAGCGCGGCGACGATCCGATTGCCGACAGCGAGCAGATTTT GAAACTGCTCAACTCGAAAAAGGACGAATCCGAACTGACCATGTGCTCGGACGTGGACCGCAACGACAAGAGCCGCGTCT GCGAGCCGGGTTCGGTGAAGGTCATTGGCCGCCGCCAGATCGAGATGTATTCACGCCTCATCCACACCGTCGATCACATC GAAGGCCGCCTGCGCGACGATATGGACGCCTTTGACGGTTTCCTCAGCCACGCCTGGGCCGTCACCGTCACCGGTGCACC AAAGCTGTGGGCCATGCGCTTCATCGAAGGTCATGAAAAGAGCCCGCGCGCCTGGTATGGCGGTGCGATCGGCATGGTCG GCTTCAACGGCGACATGAATACCGGCCTGACGCTGCGCACCATCCGGATCAAGGACGGTATTGCCGAAGTGCGCGCCGGC GCGACCCTGCTCAATGATTCCAACCCGCAGGAAGAAGAAGCCGAAACCGAACTGAAGGCCTCCGCCATGATATCAGCCAT TCGTGACGCAAAAGGCACCAACTCTGCCGCCACCAAGCGTGATGCCGCCAAAGTCGGCACCGGCGTCAAGATCCTGCTCG TCGACCACGAAGACAGCTTCGTGCACACGCTGGCGAATTATTTCCGCCAGACGGGCGCGACGGTCTCGACCGTCAGATCA CCGGTCGCAGCCGACGTGTTCGATCGCTTCCAGCCGGACCTCGTTGTCCTGTCGCCCGGACCCGGCAGCCCGACGGATTT CGACTGCAAGGCAACGATCAAGGCCGCCCGCGCCCGCGATCTGCCGATCTTCGGCGTTTGCCTCGGTCTGCAGGCATTGG CAGAAGCCTATGGCGGCGAGCTGCGCCAGCTTGCTGTGCCCATGCACGGCAAGCCTTCGCGCATCCGCGTGCTGGAACCC GGCCTCGTCTTCTCCGGTCTCGGCAAGGAAGTCACGGTCGGTCGTTACCATTCGATCTTCGCCGATCCCGCCACCCTGCC GCGTGATTTCATCATCACCGCAGAAAGCGAGGACGGCACGATCATGGGCATCGAACACGCCAAGGAACCGGTGGCCGCCG TTCAGTTCCACCCGGAATCGATCATGACGCTCGGACAGGACGCGGGCATGCGGATGATCGAGAATGTCGTGGTGCATCTG ACCCGCAAGGCGAAGACCAAGGCCGCGTGA
Upstream 100 bases:
>100_bases CATGTCTTCAGACAAAGTCCAAGCCGCCCGAATTTTCAGGCGGCTTTTTTGTTATTATGCCGCCTGTCATCGGGCCTGAA CAACAGGAAGTACGAGAGAA
Downstream 100 bases:
>100_bases TGGCGCTCGATGACACGGTTACCATTAAGCCTATCCGGGCGGAGCACGTTGAAAGCTTTCATCGTGCTCTCGATGCAGTG TCGCGTGAGCGGAAATATCT
Product: anthranilate synthase
Products: NA
Alternate protein names: Glutamine amidotransferase [H]
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MVTIIQDDGAETYETKGGIQVSRKRRPTDYANAIDNYIEKLDSHRGAVFSSNYEYPGRYTRWDTAIVDPPLGISCFGRKM WIEAYNGRGEVLLDFITEKLKATPDLTLGASSTRRLDLTVNEPDRVFTEEERSKIPTVFTALRAIVDLFYSSADSAIGLF GAFGYDLAFQFDAIKLSLARPEDQRDMVLFLPDEILVVDHYSAKAWIDRYDFEKDGMTTDGKSSDITPDPFKTTDTIPPK GDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMERCESNPSAISRRLKAINPSPYSFFINLGDQEYLVGASPEMFVRVS GRRIETCPISGTIKRGDDPIADSEQILKLLNSKKDESELTMCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHI EGRLRDDMDAFDGFLSHAWAVTVTGAPKLWAMRFIEGHEKSPRAWYGGAIGMVGFNGDMNTGLTLRTIRIKDGIAEVRAG ATLLNDSNPQEEEAETELKASAMISAIRDAKGTNSAATKRDAAKVGTGVKILLVDHEDSFVHTLANYFRQTGATVSTVRS PVAADVFDRFQPDLVVLSPGPGSPTDFDCKATIKAARARDLPIFGVCLGLQALAEAYGGELRQLAVPMHGKPSRIRVLEP GLVFSGLGKEVTVGRYHSIFADPATLPRDFIITAESEDGTIMGIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHL TRKAKTKAA
Sequences:
>Translated_729_residues MVTIIQDDGAETYETKGGIQVSRKRRPTDYANAIDNYIEKLDSHRGAVFSSNYEYPGRYTRWDTAIVDPPLGISCFGRKM WIEAYNGRGEVLLDFITEKLKATPDLTLGASSTRRLDLTVNEPDRVFTEEERSKIPTVFTALRAIVDLFYSSADSAIGLF GAFGYDLAFQFDAIKLSLARPEDQRDMVLFLPDEILVVDHYSAKAWIDRYDFEKDGMTTDGKSSDITPDPFKTTDTIPPK GDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMERCESNPSAISRRLKAINPSPYSFFINLGDQEYLVGASPEMFVRVS GRRIETCPISGTIKRGDDPIADSEQILKLLNSKKDESELTMCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHI EGRLRDDMDAFDGFLSHAWAVTVTGAPKLWAMRFIEGHEKSPRAWYGGAIGMVGFNGDMNTGLTLRTIRIKDGIAEVRAG ATLLNDSNPQEEEAETELKASAMISAIRDAKGTNSAATKRDAAKVGTGVKILLVDHEDSFVHTLANYFRQTGATVSTVRS PVAADVFDRFQPDLVVLSPGPGSPTDFDCKATIKAARARDLPIFGVCLGLQALAEAYGGELRQLAVPMHGKPSRIRVLEP GLVFSGLGKEVTVGRYHSIFADPATLPRDFIITAESEDGTIMGIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHL TRKAKTKAA >Mature_729_residues MVTIIQDDGAETYETKGGIQVSRKRRPTDYANAIDNYIEKLDSHRGAVFSSNYEYPGRYTRWDTAIVDPPLGISCFGRKM WIEAYNGRGEVLLDFITEKLKATPDLTLGASSTRRLDLTVNEPDRVFTEEERSKIPTVFTALRAIVDLFYSSADSAIGLF GAFGYDLAFQFDAIKLSLARPEDQRDMVLFLPDEILVVDHYSAKAWIDRYDFEKDGMTTDGKSSDITPDPFKTTDTIPPK GDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMERCESNPSAISRRLKAINPSPYSFFINLGDQEYLVGASPEMFVRVS GRRIETCPISGTIKRGDDPIADSEQILKLLNSKKDESELTMCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHI EGRLRDDMDAFDGFLSHAWAVTVTGAPKLWAMRFIEGHEKSPRAWYGGAIGMVGFNGDMNTGLTLRTIRIKDGIAEVRAG ATLLNDSNPQEEEAETELKASAMISAIRDAKGTNSAATKRDAAKVGTGVKILLVDHEDSFVHTLANYFRQTGATVSTVRS PVAADVFDRFQPDLVVLSPGPGSPTDFDCKATIKAARARDLPIFGVCLGLQALAEAYGGELRQLAVPMHGKPSRIRVLEP GLVFSGLGKEVTVGRYHSIFADPATLPRDFIITAESEDGTIMGIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHL TRKAKTKAA
Specific function: Tryptophan biosynthesis; first step. [C]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787518, Length=467, Percent_Identity=31.4775160599572, Blast_Score=188, Evalue=9e-49, Organism=Escherichia coli, GI1788114, Length=365, Percent_Identity=29.5890410958904, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1789760, Length=189, Percent_Identity=42.3280423280423, Blast_Score=134, Evalue=3e-32, Organism=Escherichia coli, GI1787517, Length=197, Percent_Identity=35.5329949238579, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1786809, Length=224, Percent_Identity=29.4642857142857, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1786215, Length=151, Percent_Identity=31.7880794701987, Blast_Score=76, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6320935, Length=271, Percent_Identity=37.6383763837638, Blast_Score=162, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6322638, Length=189, Percent_Identity=35.978835978836, Blast_Score=122, Evalue=2e-28,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR006805 - InterPro: IPR006220 - InterPro: IPR010112 - InterPro: IPR001317 - InterPro: IPR015890 - InterPro: IPR011702 - InterPro: IPR017926 - InterPro: IPR000991 - InterPro: IPR006221 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind; PF00117 GATase [H]
EC number: =4.1.3.27 [H]
Molecular weight: Translated: 80548; Mature: 80548
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: PS00442 GATASE_TYPE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTIIQDDGAETYETKGGIQVSRKRRPTDYANAIDNYIEKLDSHRGAVFSSNYEYPGRYT CEEEEECCCCCCEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC RWDTAIVDPPLGISCFGRKMWIEAYNGRGEVLLDFITEKLKATPDLTLGASSTRRLDLTV CCCCEECCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEEE NEPDRVFTEEERSKIPTVFTALRAIVDLFYSSADSAIGLFGAFGYDLAFQFDAIKLSLAR CCCCHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEEEEEECC PEDQRDMVLFLPDEILVVDHYSAKAWIDRYDFEKDGMTTDGKSSDITPDPFKTTDTIPPK CCCCCCEEEEECCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMERCESNPSAISRRLKAINPSPYSFFI CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE NLGDQEYLVGASPEMFVRVSGRRIETCPISGTIKRGDDPIADSEQILKLLNSKKDESELT EECCCEEEECCCCCEEEEECCCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCHHH MCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHIEGRLRDDMDAFDGFLSHAWA EHHCCCCCCHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VTVTGAPKLWAMRFIEGHEKSPRAWYGGAIGMVGFNGDMNTGLTLRTIRIKDGIAEVRAG EEECCCCHHHHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCHHHHHCC ATLLNDSNPQEEEAETELKASAMISAIRDAKGTNSAATKRDAAKVGTGVKILLVDHEDSF CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCHH VHTLANYFRQTGATVSTVRSPVAADVFDRFQPDLVVLSPGPGSPTDFDCKATIKAARARD HHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCC LPIFGVCLGLQALAEAYGGELRQLAVPMHGKPSRIRVLEPGLVFSGLGKEVTVGRYHSIF CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEECCCCEEECCHHHHEE ADPATLPRDFIITAESEDGTIMGIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHL CCCCCCCCEEEEEEECCCCEEEEHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHH TRKAKTKAA HHHHHCCCC >Mature Secondary Structure MVTIIQDDGAETYETKGGIQVSRKRRPTDYANAIDNYIEKLDSHRGAVFSSNYEYPGRYT CEEEEECCCCCCEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC RWDTAIVDPPLGISCFGRKMWIEAYNGRGEVLLDFITEKLKATPDLTLGASSTRRLDLTV CCCCEECCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEEEE NEPDRVFTEEERSKIPTVFTALRAIVDLFYSSADSAIGLFGAFGYDLAFQFDAIKLSLAR CCCCHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEEEEEECC PEDQRDMVLFLPDEILVVDHYSAKAWIDRYDFEKDGMTTDGKSSDITPDPFKTTDTIPPK CCCCCCEEEEECCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDHRPGEYSELVVKAKESFRRGDLFEVVPGQKFMERCESNPSAISRRLKAINPSPYSFFI CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCEEEEE NLGDQEYLVGASPEMFVRVSGRRIETCPISGTIKRGDDPIADSEQILKLLNSKKDESELT EECCCEEEECCCCCEEEEECCCEEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCHHH MCSDVDRNDKSRVCEPGSVKVIGRRQIEMYSRLIHTVDHIEGRLRDDMDAFDGFLSHAWA EHHCCCCCCHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VTVTGAPKLWAMRFIEGHEKSPRAWYGGAIGMVGFNGDMNTGLTLRTIRIKDGIAEVRAG EEECCCCHHHHHHHHHCCCCCCCEEECCEEEEEEECCCCCCCEEEEEEEECCCHHHHHCC ATLLNDSNPQEEEAETELKASAMISAIRDAKGTNSAATKRDAAKVGTGVKILLVDHEDSF CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCHH VHTLANYFRQTGATVSTVRSPVAADVFDRFQPDLVVLSPGPGSPTDFDCKATIKAARARD HHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCC LPIFGVCLGLQALAEAYGGELRQLAVPMHGKPSRIRVLEPGLVFSGLGKEVTVGRYHSIF CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEECCCCEEECCHHHHEE ADPATLPRDFIITAESEDGTIMGIEHAKEPVAAVQFHPESIMTLGQDAGMRMIENVVVHL CCCCCCCCEEEEEEECCCCEEEEHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHH TRKAKTKAA HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2656657; 11481430 [H]