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The map label for this gene is ccdA [H]

Identifier: 159184921

GI number: 159184921

Start: 1783274

End: 1783918

Strand: Reverse

Name: ccdA [H]

Synonym: Atu1796

Alternate gene names: 159184921

Gene position: 1783918-1783274 (Counterclockwise)

Preceding gene: 15889101

Following gene: 15889099

Centisome position: 62.78

GC content: 61.55

Gene sequence:

>645_bases
ATGGCGGGCGTTTCGGTCGAGCAGTTCAGGACGGAAGAGACCGCGCCGCGGCCGGAGGTTCGCAGAGCCGTGCTGTTTTC
GGCTTTCTGCTTCACGCTGGGTTTCGCCACGGTGTTTGTGGCGCTGGGGGCCGGTGCCTCGACGATCGGTACGCTGCTGC
GCCAGAATCTCGATATTCTCGCCAAAATCGGCGGTTTCATCATCATCCTCATGGGCCTGAATTTCCTCGGTGTTTTCCGC
ATCGGCCTGTTTTCGCGCGAGGCGCGGTTTCAGGGAGCGGGCAAGCCTGCCACGCTGTCCGGGGCCTATGTCATGGGTCT
TGCTTTCGCCTTTGGCTGGACGCCGTGCATCGGCCCGGTTCTGGGGGCTATCCTCGGGGTTGCCGCGTCGCGTGATACGG
TGGGCGATGGCGCGATGCTGCTTGCGGTCTATTCGCTTGGCCTTGCGGTGCCGTTCTGGATCGCGGCGGCGTTTTCCGGG
TCGTTCATGCGTTTCCTCGTCCGTTTTCGCCGCCATCTTGGGCTGGTGGAAAAGCTGCTCGGTGTGCTGCTGGTGCTCAC
CGGTCTCGCTTTCATGTCCGGTTTCATCACCAATGTCGCGATCTGGTTCCAGGAGACCTTTCCGATCCTGATGCAAATCG
GCTAA

Upstream 100 bases:

>100_bases
GTCGATTGCCGATATTTCCCTGTTCAGCGCGCTTCTGGCTGGCGCTCTTTCATTTCTCTCGCCCTGCGTCCTGCCGCTGG
TGCCGCCTTATCTCTGTTAT

Downstream 100 bases:

>100_bases
GCCTCTCGCGGATGTGAGGGAACGACCGTGGCTGATATCATTGGACTGCTGTTGCCGTTTTTTGGCCTGATCTTCATCGG
CTACGGTGCAGCGCGCATAA

Product: cytochrome c-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MAGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDILAKIGGFIIILMGLNFLGVFR
IGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPVLGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSG
SFMRFLVRFRRHLGLVEKLLGVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG

Sequences:

>Translated_214_residues
MAGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDILAKIGGFIIILMGLNFLGVFR
IGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPVLGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSG
SFMRFLVRFRRHLGLVEKLLGVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG
>Mature_213_residues
AGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDILAKIGGFIIILMGLNFLGVFRI
GLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPVLGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSGS
FMRFLVRFRRHLGLVEKLLGVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 22853; Mature: 22721

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDIL
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AKIGGFIIILMGLNFLGVFRIGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
LGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSGSFMRFLVRFRRHLGLVEKLL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDIL
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AKIGGFIIILMGLNFLGVFRIGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
LGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSGSFMRFLVRFRRHLGLVEKLL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]