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The map label for this gene is ygeR [C]

Identifier: 159184876

GI number: 159184876

Start: 1684808

End: 1686421

Strand: Reverse

Name: ygeR [C]

Synonym: Atu1700

Alternate gene names: 159184876

Gene position: 1686421-1684808 (Counterclockwise)

Preceding gene: 159184877

Following gene: 15889000

Centisome position: 59.35

GC content: 63.88

Gene sequence:

>1614_bases
ATGCGTATGAGACATTCGTCTAAAATCGGAAAATCAGTCGCAAAAATGTTCGCAGCGGCATTGCTGGCAAGCGTCGCAAC
GGGCTGTAGCTCGGATGCAACGCGGTTCAGCGGCCTCTTTTCCAGTGGACCGGATCGGATGACAACGGCGTCAATTCCAG
CCCGTCAGGGCGGCGGTGCTTATGGGCAGGCCCCGGTTCCGCAGGGCGACATGAATGGCGGCTATGCCTCTGCCGCGCCG
CAGGGCGGATATGCCAATCAGAACATGGCGGGCAATTCCTATCCGCAGCAGTCGGGTGGTTATGGCGGCGTTCAGCCTTC
CACGGCCCGCGCTTCGGCCTCGCCGGTGCAGCGTTCCGAGCTGTCGGCGCCGACGGCGGTGGCAAGCCGCGATCCGTCGA
CCCGCAACGAAGCCATGGCCCAGCCTTTCCCGTCCGCCCAGCGCCCAGCCGCTCCGTCTCTCGCTGCACCTGCCCGGCAG
GCCGCCGCGCCAACCGACAATCTGACGACCGCGACGGTTCGTTCCGACAAGAACGGCTGGCACACGGACGGCGCGTCTTC
GGTAACGTTGCGCCCCGGCGAAAGCATTGCCACCATTTCCAACCGCTACGGCGTGCCGGAAAAGGAACTGCTGCGGGTCA
ATGGCCTGAAAACCGCGTCTTCGGCGCAGGCTGGCCAGTCGATCCTCATTCCGAAATTCGGTCAGGCCCGCAACGCCGCC
AAGGATGCCGCCGGCAATATTGCTCTCAACCGCAATGGCGACCAGCCGACACCGCTGCGTGCCCCGGATGGGAATGTGGC
CGTGCTGCCGTCGCAGGCTGCCGCCCGTGACAAACTTTCTTCCGAAGCCGGCAAGCTGACGCCTCCGGGCGGCAAGCCGC
TGCCACCGAGCGGTGGTTACAAGGTTCAGCCGGGCGACAGCCTGGCGAAGATCGCCCGTGCAAACGGTGTCTCGGTTGCC
GCGCTCAAGGCCGCCAACGGCATTTCCAACGAAAGCATTCGTGTCGGCCAGACGCTTGCCATGCCGGGTGCTTCGACCGA
TGCCATCAAGACCGCCTCGGTTCCGGCTAAGGAAGCAGCTGCGGCCAAGCCGGTCGAAACCGCATCCATCAAGCCTGAGC
CCTACAAGGCGCCTGCTGCCGCCGCCACCACGGCGGCGCCTGCCACACCGGCAACCGCAAGTGTCAGTGATATCGAGAAA
AAGGCCGACATGGCCTCCATCGCTCCGGAATCCACCGGCATCGGCAAATATCGCTGGCCGGTTCGCGGCGCCGTCATCAA
CAATTTCGGTGACAATGTCGAAGGCAGCCGCAATGACGGCATCAACATTTCGGTTCCCGAGGGCACGCCGATCAAGGCCG
CCGAAAACGGCGTGGTCATCTATGCCGGCAACGGCCTGAAGCAGCTCGGCAACACGGTGCTGGTCCGCCACGACGACGGC
AAGGTCACGGTTTACGGCAACGCCGCCAATCTCGACGTACAGCGCGGCCAGAAGGTTCAGCGTGGCCAGACCATCGCCAC
ATCAGGCATGACCGGCAGCGCCAAGCGTCCGCAGGTTCACTTCGAAGTTCGCAAGGATGCGACGCCGGTGAACCCATCAG
GTTTCCTTGAATAG

Upstream 100 bases:

>100_bases
CGCATGGTTTTCCCCACCTCGGGAAATGGGCCTTGCAAGAAGTGAAATTTGTGCCGGATCGATCTCGATGCGGCGGGTTG
GCGTCAGTGTAGATCGAGTC

Downstream 100 bases:

>100_bases
GTATTGCGTTCTCAAGGAATGATGAAGCCGGGTGATGAGCCCGGCTTTTTCATTTTTATTGTCGGCTCGGAAATCGTCCC
CCAGTTCCAGGGGCAATTAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGAYGQAPVPQGDMNGGYASAAP
QGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSELSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQ
AAAPTDNLTTATVRSDKNGWHTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAA
KDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGYKVQPGDSLAKIARANGVSVA
ALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAAAAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEK
KADMASIAPESTGIGKYRWPVRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDG
KVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE

Sequences:

>Translated_537_residues
MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGAYGQAPVPQGDMNGGYASAAP
QGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSELSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQ
AAAPTDNLTTATVRSDKNGWHTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAA
KDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGYKVQPGDSLAKIARANGVSVA
ALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAAAAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEK
KADMASIAPESTGIGKYRWPVRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDG
KVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE
>Mature_537_residues
MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGAYGQAPVPQGDMNGGYASAAP
QGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSELSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQ
AAAPTDNLTTATVRSDKNGWHTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAA
KDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGYKVQPGDSLAKIARANGVSVA
ALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAAAAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEK
KADMASIAPESTGIGKYRWPVRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDG
KVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=242, Percent_Identity=33.0578512396694, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87082297, Length=123, Percent_Identity=37.3983739837398, Blast_Score=82, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 54586; Mature: 54586

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCC
YGQAPVPQGDMNGGYASAAPQGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQAAAPTDNLTTATVRSDKNGW
CCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCCCC
HTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAA
CCCCCCEEEECCCCCEEHHHHHCCCCHHHHHEECCCCCCCHHHCCCEEECCCCCCHHHHH
KDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGY
HHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
KVQPGDSLAKIARANGVSVAALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAA
EECCCHHHHHHHHCCCCEEEEEEHHCCCCCCCEECCCEEECCCCCCCCEEECCCCHHHHH
AAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEKKADMASIAPESTGIGKYRWP
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECC
VRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDG
CCHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCCCEEEEECCCHHHCCCEEEEEECCC
KVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE
EEEEEECCCCCCHHHCCHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRMRHSSKIGKSVAKMFAAALLASVATGCSSDATRFSGLFSSGPDRMTTASIPARQGGGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCC
YGQAPVPQGDMNGGYASAAPQGGYANQNMAGNSYPQQSGGYGGVQPSTARASASPVQRSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
LSAPTAVASRDPSTRNEAMAQPFPSAQRPAAPSLAAPARQAAAPTDNLTTATVRSDKNGW
CCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCCCC
HTDGASSVTLRPGESIATISNRYGVPEKELLRVNGLKTASSAQAGQSILIPKFGQARNAA
CCCCCCEEEECCCCCEEHHHHHCCCCHHHHHEECCCCCCCHHHCCCEEECCCCCCHHHHH
KDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGY
HHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
KVQPGDSLAKIARANGVSVAALKAANGISNESIRVGQTLAMPGASTDAIKTASVPAKEAA
EECCCHHHHHHHHCCCCEEEEEEHHCCCCCCCEECCCEEECCCCCCCCEEECCCCHHHHH
AAKPVETASIKPEPYKAPAAAATTAAPATPATASVSDIEKKADMASIAPESTGIGKYRWP
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECC
VRGAVINNFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDG
CCHHHHHCCCCCCCCCCCCCEEEECCCCCCCEECCCCEEEEECCCHHHCCCEEEEEECCC
KVTVYGNAANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFLE
EEEEEECCCCCCHHHCCHHHCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]