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The map label for this gene is prtI [H]

Identifier: 159184775

GI number: 159184775

Start: 1475968

End: 1476474

Strand: Reverse

Name: prtI [H]

Synonym: Atu1485

Alternate gene names: 159184775

Gene position: 1476474-1475968 (Counterclockwise)

Preceding gene: 15888811

Following gene: 15888809

Centisome position: 51.96

GC content: 59.17

Gene sequence:

>507_bases
ATGCCGGACTTTCTGGACGAGATGACAAGTTGCATACCAGCGCTCCGACGTTATGCGAATGCACTGACGCATGATCGCGA
CACGGCTGACGATCTCGTCCAGGACTGTCTGGAAAGAGCGATCCGCAAAAAGGCGTTGTGGCGACCGCAGGGGCCGTTGC
GCCCTTGGCTGTATCGGGTGCTTGTCAATGTCTACCGCAACAATCTGCGCGGCAGTAAACGCCGGCCCCAGCAAATCCCG
ATCGACGATGTTACGGAACAACTGGTCGTGCCGGCGGCGCAGACGGGTCGGGTTGCGCTGGCGGAAATGGCCCGCGCCAT
CGAAAAACTGTCCGGCGAACACCGCGAGACCCTGCTCCTCGTCGTTGTCGAAGGCCTGACCTATGCGGAAGCCGCGAATA
TTCTTGAAATTCCCCTTGGCACACTGATGTCCCGTCTGGGACGAGCCCGAACGGCGCTTGCCCGCATGACCCAGGAAGAC
CAGCCAAATCTCAAGGTGATAAAATGA

Upstream 100 bases:

>100_bases
ATGGAAAGCCGCTTTATCGCTGGCAGATGGACAAGAAGCCCGGAGACATTACAGGCGATGGCGTCGGCGGCGTTTGGCAC
GTTGCCAAGGAGTAACTCCA

Downstream 100 bases:

>100_bases
CCGGCAACGAGCCACAGATAACCGAAGCCGATCTGCTCTCTTATGTCGACGGGCAGCTTGAAGACGACAGGCTCAATGCC
GTTCGTGCCCACCTCACCTC

Product: ECF family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MPDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLRGSKRRPQQIP
IDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQED
QPNLKVIK

Sequences:

>Translated_168_residues
MPDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLRGSKRRPQQIP
IDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQED
QPNLKVIK
>Mature_167_residues
PDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLRGSKRRPQQIPI
DDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQEDQ
PNLKVIK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=139, Percent_Identity=29.4964028776978, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19051; Mature: 18920

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LVNVYRNNLRGSKRRPQQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
VVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQEDQPNLKVIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure 
PDFLDEMTSCIPALRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRV
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LVNVYRNNLRGSKRRPQQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
VVVEGLTYAEAANILEIPLGTLMSRLGRARTALARMTQEDQPNLKVIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]