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The map label for this gene is yjdA [H]

Identifier: 159184628

GI number: 159184628

Start: 1119465

End: 1120253

Strand: Reverse

Name: yjdA [H]

Synonym: Atu1130

Alternate gene names: 159184628

Gene position: 1120253-1119465 (Counterclockwise)

Preceding gene: 15888469

Following gene: 159184627

Centisome position: 39.42

GC content: 60.33

Gene sequence:

>789_bases
ATGAGCAAATGCAGGTCCGCCGTGAAAGAACATATACCGAAGACAGTCTTGATAACGGGCGCCGCCCGCCGGCTCGGGCG
GGCAATCGCCTCCGATCTCGCAGCCCACGGCTTTGCGATTGCCGTCCATGCCAATGAATCCATGGCGCAGGCGGAGGAAT
TCGCTAACGAAATAAGGCAAAAGGGTGGCAGAGCCACGGCCGTTCAGGCAGATCTGACACAATCTGCGCCCACCATGGCG
CTTGTCGAAAAGGCCGCCGCCGCGCTTGGCCCGATCGGCGTCGTCGTCAATAATGCATCGGTTTTTCTCGCCGATACCGC
CGAAACGCCCGATCCGGCCGTTTTCGATGCCCATTTCGCGGTGCATGTGCGGGCCCCTTCCCTCATCGCCGCCGCCTTTG
TCGAGCAACTGCCCGCGGAGAAATCCGGCCTGATCGTCAATATCATCGACCAGCGTGTGCTTGCGCTCACGCCGCGTTTT
TATTCCTACACGCTTTCGAAATCGACGCTGTGGACCGCCACACGGACTATGGCGCAGAGCTTTGCGCCGCGCGTGCGGGT
CAATGCCATCGGCCCTGGTCCCACCTTCAAAAGCGAAAGACAGGCGCCCCAGGACTTTCAGGCGCAGATCGACGGCCTTA
TATTAAAGCGTGGTCCCGCGCCGGATGAGTTCGGCCGGACGATTCGCTTTCTTTACGATACGCCGTCGATCACCGGACAA
ATGATCGCGCTCGATGGCGGCCAGCATCTTGGCTGGGAAACCCCTGACGTGGCGGAGATACCGGAATGA

Upstream 100 bases:

>100_bases
AATTAAACCGAAATTGCATTGTGAATAAAAAATCGCCCAATTCTTTTGGGGCTGAGTGACAGCTTGCGATTTGCATTTAT
ATCCAGCAAATAGGGCGTGT

Downstream 100 bases:

>100_bases
ACGGAAAGAAGCTGCCTGATGGCGGTATTCTGTTCGATGAAACCGACGACGAAGACGACGATGCCAACCTTGCCGCAACC
GACACGGCCGAGGCATCGCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSKCRSAVKEHIPKTVLITGAARRLGRAIASDLAAHGFAIAVHANESMAQAEEFANEIRQKGGRATAVQADLTQSAPTMA
LVEKAAAALGPIGVVVNNASVFLADTAETPDPAVFDAHFAVHVRAPSLIAAAFVEQLPAEKSGLIVNIIDQRVLALTPRF
YSYTLSKSTLWTATRTMAQSFAPRVRVNAIGPGPTFKSERQAPQDFQAQIDGLILKRGPAPDEFGRTIRFLYDTPSITGQ
MIALDGGQHLGWETPDVAEIPE

Sequences:

>Translated_262_residues
MSKCRSAVKEHIPKTVLITGAARRLGRAIASDLAAHGFAIAVHANESMAQAEEFANEIRQKGGRATAVQADLTQSAPTMA
LVEKAAAALGPIGVVVNNASVFLADTAETPDPAVFDAHFAVHVRAPSLIAAAFVEQLPAEKSGLIVNIIDQRVLALTPRF
YSYTLSKSTLWTATRTMAQSFAPRVRVNAIGPGPTFKSERQAPQDFQAQIDGLILKRGPAPDEFGRTIRFLYDTPSITGQ
MIALDGGQHLGWETPDVAEIPE
>Mature_261_residues
SKCRSAVKEHIPKTVLITGAARRLGRAIASDLAAHGFAIAVHANESMAQAEEFANEIRQKGGRATAVQADLTQSAPTMAL
VEKAAAALGPIGVVVNNASVFLADTAETPDPAVFDAHFAVHVRAPSLIAAAFVEQLPAEKSGLIVNIIDQRVLALTPRFY
SYTLSKSTLWTATRTMAQSFAPRVRVNAIGPGPTFKSERQAPQDFQAQIDGLILKRGPAPDEFGRTIRFLYDTPSITGQM
IALDGGQHLGWETPDVAEIPE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=26.3374485596708, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40254986, Length=189, Percent_Identity=32.2751322751323, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1787891, Length=240, Percent_Identity=25.4166666666667, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=27.3469387755102, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=29.0983606557377, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=27.6119402985075, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=28.8321167883212, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=25.0965250965251, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=29.8387096774194, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=28.2258064516129, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=183, Percent_Identity=31.6939890710383, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24649181, Length=171, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27994; Mature: 27863

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKCRSAVKEHIPKTVLITGAARRLGRAIASDLAAHGFAIAVHANESMAQAEEFANEIRQ
CHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
KGGRATAVQADLTQSAPTMALVEKAAAALGPIGVVVNNASVFLADTAETPDPAVFDAHFA
CCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCCCCEEEEEEE
VHVRAPSLIAAAFVEQLPAEKSGLIVNIIDQRVLALTPRFYSYTLSKSTLWTATRTMAQS
EEEECCHHHHHHHHHHCCCCCCCEEEEEHHCHHHHCCCHHHEEEECCCHHHHHHHHHHHH
FAPRVRVNAIGPGPTFKSERQAPQDFQAQIDGLILKRGPAPDEFGRTIRFLYDTPSITGQ
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCEEEECCCCCHHHCCEEEEEEECCCCCEE
MIALDGGQHLGWETPDVAEIPE
EEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKCRSAVKEHIPKTVLITGAARRLGRAIASDLAAHGFAIAVHANESMAQAEEFANEIRQ
HHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHH
KGGRATAVQADLTQSAPTMALVEKAAAALGPIGVVVNNASVFLADTAETPDPAVFDAHFA
CCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCCCCEEEEEEE
VHVRAPSLIAAAFVEQLPAEKSGLIVNIIDQRVLALTPRFYSYTLSKSTLWTATRTMAQS
EEEECCHHHHHHHHHHCCCCCCCEEEEEHHCHHHHCCCHHHEEEECCCHHHHHHHHHHHH
FAPRVRVNAIGPGPTFKSERQAPQDFQAQIDGLILKRGPAPDEFGRTIRFLYDTPSITGQ
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCEEEECCCCCHHHCCEEEEEEECCCCCEE
MIALDGGQHLGWETPDVAEIPE
EEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]