Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is ydgG [C]
Identifier: 159184523
GI number: 159184523
Start: 893493
End: 894653
Strand: Reverse
Name: ydgG [C]
Synonym: Atu0902
Alternate gene names: 159184523
Gene position: 894653-893493 (Counterclockwise)
Preceding gene: 159184524
Following gene: 15888236
Centisome position: 31.48
GC content: 59.43
Gene sequence:
>1161_bases ATGAATAAGAATGCAAAGCCGGATTTGGCCGGCACGGCGGCCTTGGCGCTAGACAAGGGCGATCCACTTTTGACACCGGC CTCGGTTTCGCAGCGGGATGACGCGCGCAGCCAGCAACCGCTCGGGCGGGAGGCGTTGGATGTCTTCGTTGCCTGGTCGA TCATCGGCATTTTCCTGATCATGTCCATGGCGGTCATCCATGAACTGTCGATGATCCTGATGCCAGTGGTCATGGCGGTG GTTGTCGGCATGATCCTCGGGATTTCGGCTGAGAAGCTGGCCTCCTACGGCATTCCGGGCGCAGGTGTCGCCCTCATCCT GTCCACGCTCGTCGCCGCCGTGATCTTTTTCGTGGTGAACTCGCTGATCGACCCCGTGTCGCAGCTTGCAACCGAAGGTC CTGCCCTGATCGAACGCAGTATCGATCGCTTCCTGCCCTATGTCCAAAACCTGCGATGGCTGAATATTTCCGCAGCGACG TTCAGCATGGGTTCGATGTCGATGGAATCGCTGATTTCGCGTAGCGGCGAAATCATCACGCTGCTCGGCGCGAACGTCAC GCCTGCGATCGTCCAGGGGCTGATCTTCCTTGCGGCTCTCCTGATGTTTCTCTACAGCCGCCTGCGGCTGCGCAAGGCCC TCATCATGGTCTTCCCTGCGCGCCACCAGCGGCTGAGAACCATCCGCATCATCGGCTCGGTGGAAAAAGTGCTCGGCACC TATTTCGCCACGGCAAGCCTCATCTACGCCGCGCTGGGTGTCACCATGATCGTGATCGCTTATGTTGGCGGCCTTTCCAT GCCGCTTCTGTGGGGGCTCTTTGCCTTCCTTTCGAGCTTCGTGCCCTTTCTCGGCATCACCCTCATGACCATATCGCTCA CCATCGCCGGCATCATCGCCCATGACAACATGATCCTTGCGCTGCTGCCGGCGGGTGTTTTCTTCACCATTCACCTGTTG ATGGAAAATCTCGCCTTCCCGGCAGTCGTCGGCCGCAACATGGAAATCAACCCCTTCCTCGTCTTCGTGATGATCATTTT CTGGACGTGGATGTGGGGCGCGGCCGGTGCCATGCTGGCACTGCCGCTGTCACTGATCGCCATGACGGTGACGCGGGAAC TGTTTCCCTCACGCCGGGTGGTGCCCAAGCTGCCGGATTAG
Upstream 100 bases:
>100_bases GAAGCTCTCGGCGTGAGTTAAAACGGGGCGGCGGAAATTTGCGCCGCCCCGGAACCGCCTGAGGTGTCGGACGTTAAATG CCCTATTGGGGGATAGTCCG
Downstream 100 bases:
>100_bases ATGCCGGGTTTCCGGTGGGAAATGCGAAACCAATCCGCTTGTGGGTTTTAGGGGGCGTATGTCGACGGCAGACGGAGGGC GCGTGTGGTTTTACCCCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLIMSMAVIHELSMILMPVVMAV VVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVNSLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAAT FSMGSMSMESLISRSGEIITLLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIAHDNMILALLPAGVFFTIHLL MENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRRVVPKLPD
Sequences:
>Translated_386_residues MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLIMSMAVIHELSMILMPVVMAV VVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVNSLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAAT FSMGSMSMESLISRSGEIITLLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIAHDNMILALLPAGVFFTIHLL MENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRRVVPKLPD >Mature_386_residues MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLIMSMAVIHELSMILMPVVMAV VVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVNSLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAAT FSMGSMSMESLISRSGEIITLLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIAHDNMILALLPAGVFFTIHLL MENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRRVVPKLPD
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41791; Mature: 41791
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: PS00778 HIS_ACID_PHOSPHAT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLI CCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH MSMAVIHELSMILMPVVMAVVVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAATFSMGSMSMESLISRSGEIIT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEE LLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HDNMILALLPAGVFFTIHLLMENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLA CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LPLSLIAMTVTRELFPSRRVVPKLPD HHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLI CCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH MSMAVIHELSMILMPVVMAVVVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAATFSMGSMSMESLISRSGEIIT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEE LLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HDNMILALLPAGVFFTIHLLMENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLA CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LPLSLIAMTVTRELFPSRRVVPKLPD HHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA