Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is catE [H]
Identifier: 159184524
GI number: 159184524
Start: 894738
End: 895598
Strand: Reverse
Name: catE [H]
Synonym: Atu0903
Alternate gene names: 159184524
Gene position: 895598-894738 (Counterclockwise)
Preceding gene: 15888246
Following gene: 159184523
Centisome position: 31.52
GC content: 61.21
Gene sequence:
>861_bases ATGAGTGAAATCAAACAATTCGCCCTGACGCGGCCGGCCTATGTCGGTCAGGCGCATCTCGTTGTTCACGATCTGCCGCG CGTTTCGGATTTCTACCAGAAGATCATCGGTCTTTCCGTTCTCGAAAAGAACCCGAGCGGCGAAGTGCTTGGCGTAAACG GCCAGCCGTTGCTGACGCTCTCCACCTCCGACACGGCGGAACGTGCGCCGCGCAATGCCGCCGGCTTGTTCCACACCGCC TTCCTGATGCCGAGCCGCAACGATCTCGCCCATTGGCTGGCGCATGCCACCCATCACAATATCCAGCTTCAGGGCGCATC CGACCATCTGGTCAGCGAGGCGATCTATCTCGCCGACCCGGAAGGCAATGGTATCGAGGTCTATCGCGACCGTTCGCCCG ACGAATGGAGCTACCAGCCTGACGGCACGGTGGAGATGGCGACGATCGGCCTCAACCTGCAGGCGCTTTACGACAGCGCC CCGAAGACGGCCTTTACCGGTGCGGCTGATGGCACCGCCATCGGCCACATTCATCTGCAGGTCGGCAATATTCCACAGGC GGATGAGTTTTATCAGGATGTGCTGGGGCTTAAGATCATGGCGCGGTATCCGGGTGCGAGCTTCTTCGGCTCGGGGGCCT ATCACCATCATGTCGCCGCCAATATCTGGAACAGCCGCGGTGCCTCGACCCGCAAGGACAGCATGACGGGCCTTGCCGGC TATTCGCTGAAGTTCAACGAGAAGGCGGCGCTCGACACGGCGATCGCGGCCCTCGACCGGCTGGAAATCGCCACCGAAAG ACAAAGCGATGGCATCGTCCTCAAAGACCCCTGGGGCATCGGCCTGAAGCTCTCGGCGTGA
Upstream 100 bases:
>100_bases GCCCATATTCGGCTCTAACAAACGCCGCAAAGCGGCGTCGGCCGATAGCATCGGCGACCGATCCGCCCCTTGGCGCTTCG GATTCAATATGGAGATCAAG
Downstream 100 bases:
>100_bases GTTAAAACGGGGCGGCGGAAATTTGCGCCGCCCCGGAACCGCCTGAGGTGTCGGACGTTAAATGCCCTATTGGGGGATAG TCCGATGAATAAGAATGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Catechol-induced ring cleavage extradiol dioxygenase [H]
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MSEIKQFALTRPAYVGQAHLVVHDLPRVSDFYQKIIGLSVLEKNPSGEVLGVNGQPLLTLSTSDTAERAPRNAAGLFHTA FLMPSRNDLAHWLAHATHHNIQLQGASDHLVSEAIYLADPEGNGIEVYRDRSPDEWSYQPDGTVEMATIGLNLQALYDSA PKTAFTGAADGTAIGHIHLQVGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHVAANIWNSRGASTRKDSMTGLAG YSLKFNEKAALDTAIAALDRLEIATERQSDGIVLKDPWGIGLKLSA
Sequences:
>Translated_286_residues MSEIKQFALTRPAYVGQAHLVVHDLPRVSDFYQKIIGLSVLEKNPSGEVLGVNGQPLLTLSTSDTAERAPRNAAGLFHTA FLMPSRNDLAHWLAHATHHNIQLQGASDHLVSEAIYLADPEGNGIEVYRDRSPDEWSYQPDGTVEMATIGLNLQALYDSA PKTAFTGAADGTAIGHIHLQVGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHVAANIWNSRGASTRKDSMTGLAG YSLKFNEKAALDTAIAALDRLEIATERQSDGIVLKDPWGIGLKLSA >Mature_285_residues SEIKQFALTRPAYVGQAHLVVHDLPRVSDFYQKIIGLSVLEKNPSGEVLGVNGQPLLTLSTSDTAERAPRNAAGLFHTAF LMPSRNDLAHWLAHATHHNIQLQGASDHLVSEAIYLADPEGNGIEVYRDRSPDEWSYQPDGTVEMATIGLNLQALYDSAP KTAFTGAADGTAIGHIHLQVGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHVAANIWNSRGASTRKDSMTGLAGY SLKFNEKAALDTAIAALDRLEIATERQSDGIVLKDPWGIGLKLSA
Specific function: Involved in the meta cleavage of catechol to 2- hydroxymuconic semialdehyde. Essential for growth and viability in the presence of catechol and probably involved in the detoxification of catechol [H]
COG id: COG2514
COG function: function code R; Predicted ring-cleavage extradiol dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the extradiol ring-cleavage dioxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004360 - InterPro: IPR000486 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: =1.13.11.2 [H]
Molecular weight: Translated: 30956; Mature: 30825
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS00934 GLYOXALASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIKQFALTRPAYVGQAHLVVHDLPRVSDFYQKIIGLSVLEKNPSGEVLGVNGQPLLTL CCHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCCCCCEEEECCCEEEEE STSDTAERAPRNAAGLFHTAFLMPSRNDLAHWLAHATHHNIQLQGASDHLVSEAIYLADP ECCCHHHHCCCCHHHHEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHCEEEEECC EGNGIEVYRDRSPDEWSYQPDGTVEMATIGLNLQALYDSAPKTAFTGAADGTAIGHIHLQ CCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCEECCCCCCCEEEEEEEE VGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHVAANIWNSRGASTRKDSMTGLAG ECCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCEEHHHEEEHHCCCCCCCCCCCCCCEEE YSLKFNEKAALDTAIAALDRLEIATERQSDGIVLKDPWGIGLKLSA EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECC >Mature Secondary Structure SEIKQFALTRPAYVGQAHLVVHDLPRVSDFYQKIIGLSVLEKNPSGEVLGVNGQPLLTL CHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCCCCCEEEECCCEEEEE STSDTAERAPRNAAGLFHTAFLMPSRNDLAHWLAHATHHNIQLQGASDHLVSEAIYLADP ECCCHHHHCCCCHHHHEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCHHHHCEEEEECC EGNGIEVYRDRSPDEWSYQPDGTVEMATIGLNLQALYDSAPKTAFTGAADGTAIGHIHLQ CCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCEECCCCCCCEEEEEEEE VGNIPQADEFYQDVLGLKIMARYPGASFFGSGAYHHHVAANIWNSRGASTRKDSMTGLAG ECCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCEEHHHEEEHHCCCCCCCCCCCCCCEEE YSLKFNEKAALDTAIAALDRLEIATERQSDGIVLKDPWGIGLKLSA EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8704981; 9384377 [H]