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The map label for this gene is ydfD [H]

Identifier: 159184225

GI number: 159184225

Start: 235332

End: 236705

Strand: Direct

Name: ydfD [H]

Synonym: Atu0235

Alternate gene names: 159184225

Gene position: 235332-236705 (Clockwise)

Preceding gene: 159184224

Following gene: 15887586

Centisome position: 8.28

GC content: 62.3

Gene sequence:

>1374_bases
ATGGCAGGCACACGTATAGAAAAGGTGATGGCGAATATCCGCCAGCGCATCACCTCGCGCAGCCTTGTTCCGGGTGCTCG
CCTGCCATCCGTGCGGGCGCTGGCAAAGACCATGCAGCTTTCCACGTCCACCATTGTCGAGGCTTATGACCGGCTTGTGG
CGGATGGTACGATAAGCTCACGCCCCGGCTCCGGTTTTTTTGTTGCAGGTCCGCTTGCGCCACTCTCGCTTGCCGATATC
GAACCGCGGCTCGACAGGGCGGTGGACCCTTTATGGGTTTCGCGGCAGGCGCTGGATGACGGTTCAGCTCTCGCCAAGCC
CGGCTGCGGCTGGCTTCCGGCATCGTGGATGCCACAGGAGGCATTGCGGCGGGCGATGCGAGGGCTGGCCCGTGCCGATG
ACGCCCTGCTGACGGATTACGGCAGCCCGATGGGGCTGTTGCCGTTGCGCCAGCTTCTTTCACGCCGGCTGGCCGAACAC
GGTGTACAGGCGGGTGCCAGCCAGATCATGCTTACCGATTCCGGCACGCAGGCAATCGATCTTCTCTGCCGTTTCCTGCT
GCAGCCGGGGGATACGGTTGTTGTCGACGACCCCTGTTACTTTAATTTCCACGCCCTGTTGCGAGCGCATCGGGTGAAGA
TCGTCGGGGTGCCCTATACACCTGCTGGACCCGACCTGCCACTTTTCGAGCAGGCGCTGAAAGAGCACCAGCCGCGGCTT
TATATCACCAATTCCGCGATCCATAATCCGACTGGCGCAAGACTATCCGCCGTTTCCGCCCATCGCCTGCTGATGCTGGC
CGAACAGCCGGGCCTGACCATCATCGAGGATGATATTTTTGCCGATTTCGAAACGCAGGCGGCTCCCCGGCTGGCGGCTT
TTGATGGTCTGAACCGCGTTGTCCAGATCGGCAGCTTTTCCAAGACGCTGTCCGCCTCCGTGCGATGCGGTTTCATCGCG
GCACCCCGGGCGTGGGTGGAAGCCCTGACCGACCTCAAGATCGCCACGGCTTTCGGTGGAACGCATTTTTCGGCGGCGCT
TGTCCTGTCGCTTTTGACGGATGGAAGTTATCGCAAGCATGTCGAGGCTCTCCGGCAGCGTCTTGCGGCTGCGGTGCCGG
AGGCGGCAACCCGTCTGAGATCGATCGGATGTATGCCGTGGATCGAGCCGCAGGCGGGCATGTTCCTGTGGTGCCGCCTG
CCGGAAGGGACAGATGCCGCCGATGTGGCGCAGCGAGCGCTTGCACGGCAGGTGGTGCTGGCCCCCGGCAATGTGTTCAG
CTCGTCGCAGAACGCTTCCGGTTTCATGCGTTTCAACGTGTCGCAAATGGTCGGCCCGCAGGTCATGACGGTGCTCGCGG
ATGCCCTTCGATGA

Upstream 100 bases:

>100_bases
CGGAATGGCTGGCAGGAACAGCGACAATACGATACAATATCAATAAACTGTTATGGTCTTAAAAGCAGTACGGTTAGGGA
TGGATGTGGACGGGAAGGTC

Downstream 100 bases:

>100_bases
GTGACTGGCCTTACCCATTTATCGGCATTTGAAGGAAATCGGAACAAAATCCCGTGAACGTCGTTTTCTCCGCAGAATGA
AGAGGAGGAAACACCATGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MAGTRIEKVMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISSRPGSGFFVAGPLAPLSLADI
EPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQEALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEH
GVQAGASQIMLTDSGTQAIDLLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRL
YITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIA
APRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKHVEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRL
PEGTDAADVAQRALARQVVLAPGNVFSSSQNASGFMRFNVSQMVGPQVMTVLADALR

Sequences:

>Translated_457_residues
MAGTRIEKVMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISSRPGSGFFVAGPLAPLSLADI
EPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQEALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEH
GVQAGASQIMLTDSGTQAIDLLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRL
YITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIA
APRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKHVEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRL
PEGTDAADVAQRALARQVVLAPGNVFSSSQNASGFMRFNVSQMVGPQVMTVLADALR
>Mature_456_residues
AGTRIEKVMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISSRPGSGFFVAGPLAPLSLADIE
PRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQEALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEHG
VQAGASQIMLTDSGTQAIDLLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRLY
ITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRVVQIGSFSKTLSASVRCGFIAA
PRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKHVEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLP
EGTDAADVAQRALARQVVLAPGNVFSSSQNASGFMRFNVSQMVGPQVMTVLADALR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=309, Percent_Identity=25.8899676375405, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI33469970, Length=309, Percent_Identity=25.8899676375405, Blast_Score=94, Evalue=4e-19,
Organism=Escherichia coli, GI1787710, Length=454, Percent_Identity=28.6343612334802, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1790797, Length=453, Percent_Identity=26.2693156732892, Blast_Score=144, Evalue=2e-35,
Organism=Drosophila melanogaster, GI21356535, Length=337, Percent_Identity=24.0356083086053, Blast_Score=84, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49322; Mature: 49190

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTRIEKVMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISS
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPGSGFFVAGPLAPLSLADIEPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQE
CCCCCEEEECCCCCCCHHCCCHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCHH
ALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEHGVQAGASQIMLTDSGTQAID
HHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
LLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRL
HHHHHHHCCCCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCEE
YITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRV
EEECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEECCHHCCCCHHCCCHHHHHHHHHHH
VQIGSFSKTLSASVRCGFIAAPRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKH
HHHCCCHHHHHHHCEECEEECCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCHHHH
VEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLPEGTDAADVAQRALARQVVL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEE
APGNVFSSSQNASGFMRFNVSQMVGPQVMTVLADALR
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AGTRIEKVMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISS
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPGSGFFVAGPLAPLSLADIEPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQE
CCCCCEEEECCCCCCCHHCCCHHHHHCCCCHHHHHHHCCCCCHHCCCCCCCCCCCCCCHH
ALRRAMRGLARADDALLTDYGSPMGLLPLRQLLSRRLAEHGVQAGASQIMLTDSGTQAID
HHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
LLCRFLLQPGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRL
HHHHHHHCCCCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCEE
YITNSAIHNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRV
EEECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEECCHHCCCCHHCCCHHHHHHHHHHH
VQIGSFSKTLSASVRCGFIAAPRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKH
HHHCCCHHHHHHHCEECEEECCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCHHHH
VEALRQRLAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLPEGTDAADVAQRALARQVVL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEE
APGNVFSSSQNASGFMRFNVSQMVGPQVMTVLADALR
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]