Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15887586
Identifier: 15887586
GI number: 15887586
Start: 236801
End: 237118
Strand: Direct
Name: 15887586
Synonym: Atu0236
Alternate gene names: NA
Gene position: 236801-237118 (Clockwise)
Preceding gene: 159184225
Following gene: 15887588
Centisome position: 8.33
GC content: 63.52
Gene sequence:
>318_bases ATGACATTCGATCCCAATAACCCGCGTCCGGACCGCGATTTACGTCCGGAACTGAATATCAGCAATGAACCGCAAGCCCG CACGTCGTCGTCCTGGGTACCGTGGTTGGCGATCATCGTTGTCGTTCTGGTCGGCGTTTTCGCCTGGTCGCAAATGAGCG GCCCGACCACCGATCCGGCAACGACGTCCTCCACCACGCCGCCTGCGGCAACGGATCAGGCACCGGCGCCGATGGCTCCG ACCACCCCGGCAACGCCGCCCGTGAACAACACGGCACCGGCAAGCCCGAATACGGGTGGCACGCAGACCCAGCCTTAA
Upstream 100 bases:
>100_bases GATGAGTGACTGGCCTTACCCATTTATCGGCATTTGAAGGAAATCGGAACAAAATCCCGTGAACGTCGTTTTCTCCGCAG AATGAAGAGGAGGAAACACC
Downstream 100 bases:
>100_bases CGGGTTGATTGATATGATAGAACCGCCTGCTTTTCAGCAGGCGGTTTTTCTTTGTGGAAAGCCAGCCGCCCTTAAAGCTG CTCCATGGCGGAGGGGCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MTFDPNNPRPDRDLRPELNISNEPQARTSSSWVPWLAIIVVVLVGVFAWSQMSGPTTDPATTSSTTPPAATDQAPAPMAP TTPATPPVNNTAPASPNTGGTQTQP
Sequences:
>Translated_105_residues MTFDPNNPRPDRDLRPELNISNEPQARTSSSWVPWLAIIVVVLVGVFAWSQMSGPTTDPATTSSTTPPAATDQAPAPMAP TTPATPPVNNTAPASPNTGGTQTQP >Mature_104_residues TFDPNNPRPDRDLRPELNISNEPQARTSSSWVPWLAIIVVVLVGVFAWSQMSGPTTDPATTSSTTPPAATDQAPAPMAPT TPATPPVNNTAPASPNTGGTQTQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10976; Mature: 10845
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFDPNNPRPDRDLRPELNISNEPQARTSSSWVPWLAIIVVVLVGVFAWSQMSGPTTDPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC TTSSTTPPAATDQAPAPMAPTTPATPPVNNTAPASPNTGGTQTQP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TFDPNNPRPDRDLRPELNISNEPQARTSSSWVPWLAIIVVVLVGVFAWSQMSGPTTDPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC TTSSTTPPAATDQAPAPMAPTTPATPPVNNTAPASPNTGGTQTQP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA