Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yegX [H]
Identifier: 159184224
GI number: 159184224
Start: 233224
End: 234321
Strand: Direct
Name: yegX [H]
Synonym: Atu0233
Alternate gene names: 159184224
Gene position: 233224-234321 (Clockwise)
Preceding gene: 15887582
Following gene: 159184225
Centisome position: 8.21
GC content: 62.02
Gene sequence:
>1098_bases ATGCGTTCATCGGCTGTACCAGCACTTCTCTTCGGTTGCCTTCTGCTTGGCGGCTGCACGTCCAGTTCCGGGCCGGAAAG CCTGATGGCTGGCTTGCCGTCGAAGGAAACCACCAGTTCGGTCAAGCCATCGGCGCCGGTGCCGCAGGCAAGTGTCGGCA CGCAGCCGATTACGGCTCAGCCACGGCAGGAAGTCCTGGCGTGGGGCGGGCCGGTGCCGGATGAGCCCAAGGCCTTTTCC GCCGTCACGCCGAAGGCATCCCTGCCGCAGAATGCGCCTGAAATCCGTCTGCCCGTTCCTTCGCAGACCGGAATGGTGCG ACCGGCAGAACGGCCGATGGAGCGCCCGGTGCAATTGGCCATGGCTGCCGCTCCGGCGGCGAGCGCTGGCGCGCAGATCC GCTCCCGCATCTTCCGTTCCAGTTTCAGCGACGCCAAGCCCATCAATTTCGGCCGGGTTCAGCCGCGCCATTTCCAGGTC CATGGTGTGGATGTGTCCCGCTGGCAGGCGAATATAGACTGGCCGCAGCTGCGCACCCGCGGTGCGAATTTCGCGTTCAT CAAGGCGACGGATGGCGGCGATCATCTCGATCCGATGTTCCGCACCAACTGGCAGCGCGCGAAGGAAGCAGGCATCCGCC GCGGCGCTTACCACTTCTTTTATTGGTGCCGCAACGCCAGCGAACAGGCGGACTGGTTCATTCGCAACGTGCCGCGCGAT CCGGATGCGCTGCCGCCGGTCATCGACGTGGAATATAACGGTGAATCGAGCTGCAAGATGCGCCATTCCCGTGAACGCGT TTTGGAAAAGATGCGTGTCTTCATGGACAAGCTCGAGCGCCATTATGGTCAGCGGCCGATCATCTATACGGCGCCCGATT TCTACAAGGACAACCTCCAGGGCGAATTCCACGATTATCCCTTCTGGCTGCGTGCAGTCGCTCAGCACCCGTCAGCGGTC TATCCCGGTCGCAAGTGGCTATTCTGGCAATATTCCGGCTCCGGCCTGTCGCATGGCGTCGATGGCCGTATCGATCTCAA TGTCTTCAACGGCAGCGAGGAATCCTGGCATCGCTGGGTCGATCGTCGTTCGAGTTGA
Upstream 100 bases:
>100_bases ATTCAGTCTTTTTTGATAATCTTCCGTTAGCATTTGTCTTTCGAGGTCTGCGGGTGGCGTCTGAGTGTCCCCCCCACTTT TGTTTTGCGTACGGGTTCTC
Downstream 100 bases:
>100_bases TGATCAGCGCGCGAATTTTCGCGCGCCCGCAACGCACAGCACCACCACCAGCGTCACGCCGATCATGGCCGGGCTCACCT CTTCGTGCAGCAGAGTTGCG
Product: lysozyme
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQPRQEVLAWGGPVPDEPKAFS AVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLAMAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQV HGVDVSRWQANIDWPQLRTRGANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRD PDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQGEFHDYPFWLRAVAQHPSAV YPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWVDRRSS
Sequences:
>Translated_365_residues MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQPRQEVLAWGGPVPDEPKAFS AVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLAMAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQV HGVDVSRWQANIDWPQLRTRGANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRD PDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQGEFHDYPFWLRAVAQHPSAV YPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWVDRRSS >Mature_365_residues MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQPRQEVLAWGGPVPDEPKAFS AVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLAMAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQV HGVDVSRWQANIDWPQLRTRGANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRD PDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQGEFHDYPFWLRAVAQHPSAV YPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWVDRRSS
Specific function: Unknown
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 25 family [H]
Homologues:
Organism=Escherichia coli, GI87082043, Length=241, Percent_Identity=39.4190871369295, Blast_Score=155, Evalue=4e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002053 - InterPro: IPR008270 - InterPro: IPR017853 - InterPro: IPR018077 - InterPro: IPR013781 [H]
Pfam domain/function: PF01183 Glyco_hydro_25 [H]
EC number: NA
Molecular weight: Translated: 40971; Mature: 40971
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQ CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRQEVLAWGGPVPDEPKAFSAVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLA CHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH MAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQVHGVDVSRWQANIDWPQLRTR HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCHHHHHC GANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRD CCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCC PDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQ CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCC GEFHDYPFWLRAVAQHPSAVYPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWV CCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHH DRRSS HCCCC >Mature Secondary Structure MRSSAVPALLFGCLLLGGCTSSSGPESLMAGLPSKETTSSVKPSAPVPQASVGTQPITAQ CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRQEVLAWGGPVPDEPKAFSAVTPKASLPQNAPEIRLPVPSQTGMVRPAERPMERPVQLA CHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH MAAAPAASAGAQIRSRIFRSSFSDAKPINFGRVQPRHFQVHGVDVSRWQANIDWPQLRTR HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCHHHHHC GANFAFIKATDGGDHLDPMFRTNWQRAKEAGIRRGAYHFFYWCRNASEQADWFIRNVPRD CCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCC PDALPPVIDVEYNGESSCKMRHSRERVLEKMRVFMDKLERHYGQRPIIYTAPDFYKDNLQ CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCC GEFHDYPFWLRAVAQHPSAVYPGRKWLFWQYSGSGLSHGVDGRIDLNVFNGSEESWHRWV CCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHH DRRSS HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]