Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is pntB [H]
Identifier: 15889760
GI number: 15889760
Start: 2464191
End: 2465636
Strand: Direct
Name: pntB [H]
Synonym: Atu2494
Alternate gene names: 15889760
Gene position: 2464191-2465636 (Clockwise)
Preceding gene: 15889759
Following gene: 15889768
Centisome position: 86.72
GC content: 62.1
Gene sequence:
>1446_bases ATGACCATTGGTATCGTTTCCGCGGCCTATGTTGCCGCAGCCGTTCTTTTCATCCTTTCCCTCGGCGGCCTTTCCGGACA GGAAAGCGCCAAACGCGCTGTCTGGTACGGCATAACAGGCATGGGTCTCGCCATCGTCGCCACTGTCTTCGGCCCCGAAA TCAGCAAGGGTGTCGGGCAATGGCTCGTCGTGCTCCTGATGCTCGCCGGCGGCTCGGTTCTCGGCTACTTCGTCGCAAGC CGCGTGCAGATGACCGAAATGCCGCAGCTTGTGGCAGCCCTTCACTCCTTCGTCGGTCTTGCCGCCGTCTTCATCGGCTT CAACGCCCATATCGAGGAAGCGCATGTCGCCTCGCTCGATGAGACGGCACGGTCGTTGCTGACAGGCTTTTCCGCCATCC TCGCCCACAAGACACCGGTGGAACTGGCGATCATGAAGGTCGAGGTCTTCCTCGGCGTCTTCATCGGCGCAGTCACCTTC ACCGGCTCCGTCGTCGCCTTCGGCAAGCTTGCCGGCAAGGTGGACGGCAAGGCGAAGAAGCTGCCGGGCGGACACCTGCT GAACGCCGGTGCTGCGATCCTGTCGCTCGTGCTGCTCATCATGTATTGCAACGGCGCCGGCGCATGGACCCTCGTCCTGA TGACGCTTGCCGCCTTCTTCATCGGTTACCACCTGATCATGGGTATCGGCGGCGCTGACATGCCTGTCGTCGTTTCGATG TTGAACAGCTATTCCGGCTGGGCGGCCGCCGCCATCGGCTTCACGCTCGGCAACGATCTCCTGATCGTGACGGGCGCGCT GGTCGGCTCCTCGGGTGCGATCCTCTCCTACATCATGTGCAAGGCGATGAACCGCTCTTTCATCTCGGTCATCCTTGGCG GCTTCGGCGGCACGACGGGCCCGGCAATGGAAATCGAGGGCGAGCAGGTGGCGATCGACGCCGAGGGCGTGGCCGCAGCA CTCAACGACGCCGACAGCGTCATCATCGTGCCCGGTTATGGCATGGCGGTGGCGCAGGCCCAGAGCGCGGTATCCGAGCT GACCCGCAAGCTGCGCGCCGACGGCAAGACCGTGCGTTTCGCCATCCACCCCGTTGCCGGCCGCCTTCCCGGCCACATGA ACGTGCTGCTCGCCGAAGCCAAGGTGCCCTACGACATCGTGCTGGAAATGGACGAGATCAACGACGATTTCCCGAGCACC GACGTCGTCATCGTCATCGGCTCCAACGATATCGTCAACCCGGCGGCACAGGACGATCCGAATTCACCCATCGCTGGCAT GCCGGTTCTGGAAGTGTGGAAGTCGAAGCTCGTCATCGTCTCCAAGCGCGGCCAGGGCACGGGTTACTCCGGCATCGAGA ACCCGCTGTTCTATAAGGACAATACGCGCATGTTCTATGGCGATGCGAAGAAGTCGATCAACGAGCTTCTGCCGCTGATC AAGTAA
Upstream 100 bases:
>100_bases CCGTCCTGATCGCGACGATCAACATCGTTGGCGGTTTCCTCGTGACACGGCGCATGCTCGCCATGTTCCAGAAGTCCTGA GCGTGCGGGGATTTAAATAA
Downstream 100 bases:
>100_bases TGAGAAAGGCGTTTCCGGGAAACCGGGAACGCCCTTTTTACTGACGTGAAAAGAAACCTCCACCGTCATCCTCGGGCTTG TCCCGAGGATCTATCCACGT
Product: NAD(P)+ transhydrogenase beta chain
Products: NA
Alternate protein names: Nicotinamide nucleotide transhydrogenase subunit beta; Pyridine nucleotide transhydrogenase subunit beta [H]
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MTIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLAIVATVFGPEISKGVGQWLVVLLMLAGGSVLGYFVAS RVQMTEMPQLVAALHSFVGLAAVFIGFNAHIEEAHVASLDETARSLLTGFSAILAHKTPVELAIMKVEVFLGVFIGAVTF TGSVVAFGKLAGKVDGKAKKLPGGHLLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIGYHLIMGIGGADMPVVVSM LNSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVILGGFGGTTGPAMEIEGEQVAIDAEGVAAA LNDADSVIIVPGYGMAVAQAQSAVSELTRKLRADGKTVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPST DVVIVIGSNDIVNPAAQDDPNSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIENPLFYKDNTRMFYGDAKKSINELLPLI K
Sequences:
>Translated_481_residues MTIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLAIVATVFGPEISKGVGQWLVVLLMLAGGSVLGYFVAS RVQMTEMPQLVAALHSFVGLAAVFIGFNAHIEEAHVASLDETARSLLTGFSAILAHKTPVELAIMKVEVFLGVFIGAVTF TGSVVAFGKLAGKVDGKAKKLPGGHLLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIGYHLIMGIGGADMPVVVSM LNSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVILGGFGGTTGPAMEIEGEQVAIDAEGVAAA LNDADSVIIVPGYGMAVAQAQSAVSELTRKLRADGKTVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPST DVVIVIGSNDIVNPAAQDDPNSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIENPLFYKDNTRMFYGDAKKSINELLPLI K >Mature_480_residues TIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLAIVATVFGPEISKGVGQWLVVLLMLAGGSVLGYFVASR VQMTEMPQLVAALHSFVGLAAVFIGFNAHIEEAHVASLDETARSLLTGFSAILAHKTPVELAIMKVEVFLGVFIGAVTFT GSVVAFGKLAGKVDGKAKKLPGGHLLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIGYHLIMGIGGADMPVVVSML NSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVILGGFGGTTGPAMEIEGEQVAIDAEGVAAAL NDADSVIIVPGYGMAVAQAQSAVSELTRKLRADGKTVRFAIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPSTD VVIVIGSNDIVNPAAQDDPNSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIENPLFYKDNTRMFYGDAKKSINELLPLIK
Specific function: The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane [H]
COG id: COG1282
COG function: function code C; NAD/NADP transhydrogenase beta subunit
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PNT beta subunit family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=479, Percent_Identity=47.8079331941545, Blast_Score=404, Evalue=1e-112, Organism=Homo sapiens, GI122939153, Length=479, Percent_Identity=47.8079331941545, Blast_Score=404, Evalue=1e-112, Organism=Escherichia coli, GI1787886, Length=484, Percent_Identity=60.5371900826446, Blast_Score=549, Evalue=1e-157, Organism=Caenorhabditis elegans, GI17550456, Length=489, Percent_Identity=47.8527607361963, Blast_Score=383, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012136 - InterPro: IPR004003 [H]
Pfam domain/function: PF02233 PNTB [H]
EC number: =1.6.1.2 [H]
Molecular weight: Translated: 50079; Mature: 49948
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLAIVATVFGPEISKGVGQ CEEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCHHHHHHHHHHHCCHHHHHHHH WLVVLLMLAGGSVLGYFVASRVQMTEMPQLVAALHSFVGLAAVFIGFNAHIEEAHVASLD HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ETARSLLTGFSAILAHKTPVELAIMKVEVFLGVFIGAVTFTGSVVAFGKLAGKVDGKAKK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC LPGGHLLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIGYHLIMGIGGADMPVVVSM CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LNSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVILGGFGGTTG HHCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCC PAMEIEGEQVAIDAEGVAAALNDADSVIIVPGYGMAVAQAQSAVSELTRKLRADGKTVRF CCEEECCCEEEEECCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEE AIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPSTDVVIVIGSNDIVNPAAQDDP EEECCCCCCCCCCEEEEECCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCCCCCCCCCCC NSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIENPLFYKDNTRMFYGDAKKSINELLPLI CCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCEEEECCHHHHHHHHHHCC K C >Mature Secondary Structure TIGIVSAAYVAAAVLFILSLGGLSGQESAKRAVWYGITGMGLAIVATVFGPEISKGVGQ EEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCCHHHHHHHHHHHCCHHHHHHHH WLVVLLMLAGGSVLGYFVASRVQMTEMPQLVAALHSFVGLAAVFIGFNAHIEEAHVASLD HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ETARSLLTGFSAILAHKTPVELAIMKVEVFLGVFIGAVTFTGSVVAFGKLAGKVDGKAKK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC LPGGHLLNAGAAILSLVLLIMYCNGAGAWTLVLMTLAAFFIGYHLIMGIGGADMPVVVSM CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LNSYSGWAAAAIGFTLGNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVILGGFGGTTG HHCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCC PAMEIEGEQVAIDAEGVAAALNDADSVIIVPGYGMAVAQAQSAVSELTRKLRADGKTVRF CCEEECCCEEEEECCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEE AIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPSTDVVIVIGSNDIVNPAAQDDP EEECCCCCCCCCCEEEEECCCCCEEEEEEEHHCCCCCCCCCEEEEECCCCCCCCCCCCCC NSPIAGMPVLEVWKSKLVIVSKRGQGTGYSGIENPLFYKDNTRMFYGDAKKSINELLPLI CCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEECCCEEEECCHHHHHHHHHHCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]