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The map label for this gene is sodBI [H]

Identifier: 15888217

GI number: 15888217

Start: 872849

End: 873451

Strand: Direct

Name: sodBI [H]

Synonym: Atu0876

Alternate gene names: 15888217

Gene position: 872849-873451 (Clockwise)

Preceding gene: 159184510

Following gene: 159184511

Centisome position: 30.72

GC content: 56.72

Gene sequence:

>603_bases
ATGGCCTTCGAACTTCCTGAACTCCCCTACGACTATGACGCGCTTGCACCTTACATGTCGCGCGAGACGCTCGAGTTCCA
TCACGACAAGCACCACAAGGCTTATGTCGACAACGGCAACAAGCTGGCTGCAGAAGCCGGTCTTTCCGACCTGTCGCTCG
AAGAAGTCGTGAAGAAGTCGTTTGGCACCAATGCCGGCCTCTTCAACAATGCTGCCCAGCACTACAACCACGTCCATTTC
TGGAAGTGGATGAAGAAGGACGGCGGCGGCAACAAGCTGCCGGGCAAGCTGGAACAGGCATTCGCTTCCGATCTCGGCGG
CTACGACAAGTTCAAGGCAGATTTCATCGCTGCCGGCACCACGCAGTTCGGCTCCGGCTGGGCATGGCTCTCCGTCAAGA
ACGGCAAGCTTGAAATCTCCAAGACCCCGAACGGTGAAAACCCGCTGGTTCACGGCGCAGATCCGATCCTCGGCGTCGAC
GTATGGGAACACTCCTATTACATCGACTACCGCAACCTGCGTCCGAAGTACCTCGAAGCCTTCGTTGATAACCTCATCAA
CTGGGACTACGTCCTGGAGCGTTACGAAGCCGCTGCCAAGTAA

Upstream 100 bases:

>100_bases
ATTTTGATATTTCACAGGTTGCCCAAACAGAGGTTCGCTCCTATGGTCCGCTCACACGGTTTCTAGGAGCGGTAACCCGC
TGCAAAAAGGAGTAAAAACC

Downstream 100 bases:

>100_bases
GGCTTGGCGAACGGAATTTTTCGAACACCCGGCCTTCGTGCCGGGTGTTCTGCTTTTGGCATGTCGCGCGGTGTCACAAG
CCTGTCATCAGCCGGGTTTA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAAEAGLSDLSLEEVVKKSFGTNAGLFNNAAQHYNHVHF
WKWMKKDGGGNKLPGKLEQAFASDLGGYDKFKADFIAAGTTQFGSGWAWLSVKNGKLEISKTPNGENPLVHGADPILGVD
VWEHSYYIDYRNLRPKYLEAFVDNLINWDYVLERYEAAAK

Sequences:

>Translated_200_residues
MAFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAAEAGLSDLSLEEVVKKSFGTNAGLFNNAAQHYNHVHF
WKWMKKDGGGNKLPGKLEQAFASDLGGYDKFKADFIAAGTTQFGSGWAWLSVKNGKLEISKTPNGENPLVHGADPILGVD
VWEHSYYIDYRNLRPKYLEAFVDNLINWDYVLERYEAAAK
>Mature_199_residues
AFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAAEAGLSDLSLEEVVKKSFGTNAGLFNNAAQHYNHVHFW
KWMKKDGGGNKLPGKLEQAFASDLGGYDKFKADFIAAGTTQFGSGWAWLSVKNGKLEISKTPNGENPLVHGADPILGVDV
WEHSYYIDYRNLRPKYLEAFVDNLINWDYVLERYEAAAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=42, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=42, Blast_Score=151, Evalue=4e-37,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=37, Blast_Score=126, Evalue=1e-29,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=49.748743718593, Blast_Score=186, Evalue=7e-49,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=43.2692307692308, Blast_Score=167, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=199, Percent_Identity=37.6884422110553, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=35.8585858585859, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=32.7014218009479, Blast_Score=96, Evalue=5e-21,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38.5, Blast_Score=137, Evalue=5e-33,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22632; Mature: 22501

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAAEAGLSDLSLEEVVKKS
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHCCCCCCCHHHHHHHH
FGTNAGLFNNAAQHYNHVHFWKWMKKDGGGNKLPGKLEQAFASDLGGYDKFKADFIAAGT
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHEEECCC
TQFGSGWAWLSVKNGKLEISKTPNGENPLVHGADPILGVDVWEHSYYIDYRNLRPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVDNLINWDYVLERYEAAAK
HHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AFELPELPYDYDALAPYMSRETLEFHHDKHHKAYVDNGNKLAAEAGLSDLSLEEVVKKS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHCCCCCCCHHHHHHHH
FGTNAGLFNNAAQHYNHVHFWKWMKKDGGGNKLPGKLEQAFASDLGGYDKFKADFIAAGT
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHEEECCC
TQFGSGWAWLSVKNGKLEISKTPNGENPLVHGADPILGVDVWEHSYYIDYRNLRPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVDNLINWDYVLERYEAAAK
HHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]