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The map label for this gene is rbsR [H]

Identifier: 239617387

GI number: 239617387

Start: 1053334

End: 1054323

Strand: Reverse

Name: rbsR [H]

Synonym: Kole_0997

Alternate gene names: 239617387

Gene position: 1054323-1053334 (Counterclockwise)

Preceding gene: 239617391

Following gene: 239617386

Centisome position: 45.8

GC content: 38.18

Gene sequence:

>990_bases
TTGAAAGTGAGAACAAAAGACATAGCACGAATCGCGAATGTATCAACTGCAACAGTATCCCGCGTTTTAAATGGAAGTCC
GAATGTTTCTGAAAAAACCCGACAAAAAGTTTTGATGGCAATAGAATCTCTTGACTACACACCTGACCTTTTTGCAAAAA
ACCTTGCCAAAAAACGCTATTGGGAGATAGGAATAGGCTGTACTGATGAAGTTTTTAGGGGAATTGAAAGTAGAGATTAT
CAGTTTTATCTCAAGGTTATTGAGGGAATACAAAAGTACTTTTCCAGGAAAAAATGTAACTTTACCATTTTTTCCGTTGA
CTCTAAAAATCTCGAAGAAAACATAAAAGGAAAACAGGGGTTTTTGCTGGTCGGTGGAGGCGTTACTAAAAAAACTATTG
ATTTCTTTCAAAGTATCGGAAAACCCGTCGTTCTCGTTGACCAATATATTTATGGTTATGAAATTGATTGTGTTGTTTCC
AATGGTTTCTATGGTGAGTACAAGTTAATAAAGTACTTTCTGGATAAAGGTTATCGTTCAATAGCTTATCTATTCGATAC
TGCCACCCACTTCAGCTATGAACAAAGAAGGCTCGGTTACGAAAAAGCTATGTACGAAAAAGGTTACACTCCTCTGGTTT
ATCCATTCAACGAAAAAAGCAACATGCTGGAAATCACAAAGAGAATCCTTGAAGAACACCCTGAAGTCGAAGCGATCGCT
ACCTGTGAAGACAGGGTTGCTCTTAAAGTAATTGAATGTTTGAAGGCTTTGGGAAAACGTGTTCCAGATGATGTGGGAGT
AATGGGTTTTGACGATATAGAATCCGCAGAAACATCAGATCCTGCTTTGACAACGGTCAATGTCTTCAAAGAAGAAATGG
GCTCTCTTGCTGCCAAAAGGCTTTTTGACCTGTTGAACAACGAAGACATAAGGCCTACACAGATATCGTTGTTTACCAAC
ATTGTTATTCGAGACAGCGTGAAACTATAA

Upstream 100 bases:

>100_bases
TATGTTCAGTAGAAAACAGGTTAGCTTTAATAACCTTTGATGTGAAATAATATGGCATATAAATGTAATCGCTTACAATT
ACCAAAGGAGGATGAAGCTT

Downstream 100 bases:

>100_bases
ACAGGAGGGATTTCAAATGGTAAAGGTCGGTGTAGTAGGTTATGGAACCATAGGGCAGAGACTTGCCGATGGAGTAGCAT
TTCAAGGTGATATGGAGCTT

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKVRTKDIARIANVSTATVSRVLNGSPNVSEKTRQKVLMAIESLDYTPDLFAKNLAKKRYWEIGIGCTDEVFRGIESRDY
QFYLKVIEGIQKYFSRKKCNFTIFSVDSKNLEENIKGKQGFLLVGGGVTKKTIDFFQSIGKPVVLVDQYIYGYEIDCVVS
NGFYGEYKLIKYFLDKGYRSIAYLFDTATHFSYEQRRLGYEKAMYEKGYTPLVYPFNEKSNMLEITKRILEEHPEVEAIA
TCEDRVALKVIECLKALGKRVPDDVGVMGFDDIESAETSDPALTTVNVFKEEMGSLAAKRLFDLLNNEDIRPTQISLFTN
IVIRDSVKL

Sequences:

>Translated_329_residues
MKVRTKDIARIANVSTATVSRVLNGSPNVSEKTRQKVLMAIESLDYTPDLFAKNLAKKRYWEIGIGCTDEVFRGIESRDY
QFYLKVIEGIQKYFSRKKCNFTIFSVDSKNLEENIKGKQGFLLVGGGVTKKTIDFFQSIGKPVVLVDQYIYGYEIDCVVS
NGFYGEYKLIKYFLDKGYRSIAYLFDTATHFSYEQRRLGYEKAMYEKGYTPLVYPFNEKSNMLEITKRILEEHPEVEAIA
TCEDRVALKVIECLKALGKRVPDDVGVMGFDDIESAETSDPALTTVNVFKEEMGSLAAKRLFDLLNNEDIRPTQISLFTN
IVIRDSVKL
>Mature_329_residues
MKVRTKDIARIANVSTATVSRVLNGSPNVSEKTRQKVLMAIESLDYTPDLFAKNLAKKRYWEIGIGCTDEVFRGIESRDY
QFYLKVIEGIQKYFSRKKCNFTIFSVDSKNLEENIKGKQGFLLVGGGVTKKTIDFFQSIGKPVVLVDQYIYGYEIDCVVS
NGFYGEYKLIKYFLDKGYRSIAYLFDTATHFSYEQRRLGYEKAMYEKGYTPLVYPFNEKSNMLEITKRILEEHPEVEAIA
TCEDRVALKVIECLKALGKRVPDDVGVMGFDDIESAETSDPALTTVNVFKEEMGSLAAKRLFDLLNNEDIRPTQISLFTN
IVIRDSVKL

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=339, Percent_Identity=28.3185840707965, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787948, Length=339, Percent_Identity=27.1386430678466, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788474, Length=353, Percent_Identity=28.0453257790368, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI48994940, Length=327, Percent_Identity=27.217125382263, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1789202, Length=295, Percent_Identity=26.7796610169492, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790369, Length=339, Percent_Identity=24.188790560472, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787580, Length=348, Percent_Identity=24.4252873563218, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790715, Length=330, Percent_Identity=22.7272727272727, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789456, Length=336, Percent_Identity=22.3214285714286, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37567; Mature: 37567

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRTKDIARIANVSTATVSRVLNGSPNVSEKTRQKVLMAIESLDYTPDLFAKNLAKKRY
CCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
WEIGIGCTDEVFRGIESRDYQFYLKVIEGIQKYFSRKKCNFTIFSVDSKNLEENIKGKQG
EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCCC
FLLVGGGVTKKTIDFFQSIGKPVVLVDQYIYGYEIDCVVSNGFYGEYKLIKYFLDKGYRS
EEEECCCCHHHHHHHHHHCCCCEEEEEHHHCCEEEEEEEECCCCCHHHHHHHHHHCCHHH
IAYLFDTATHFSYEQRRLGYEKAMYEKGYTPLVYPFNEKSNMLEITKRILEEHPEVEAIA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEH
TCEDRVALKVIECLKALGKRVPDDVGVMGFDDIESAETSDPALTTVNVFKEEMGSLAAKR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LFDLLNNEDIRPTQISLFTNIVIRDSVKL
HHHHHCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVRTKDIARIANVSTATVSRVLNGSPNVSEKTRQKVLMAIESLDYTPDLFAKNLAKKRY
CCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
WEIGIGCTDEVFRGIESRDYQFYLKVIEGIQKYFSRKKCNFTIFSVDSKNLEENIKGKQG
EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCCC
FLLVGGGVTKKTIDFFQSIGKPVVLVDQYIYGYEIDCVVSNGFYGEYKLIKYFLDKGYRS
EEEECCCCHHHHHHHHHHCCCCEEEEEHHHCCEEEEEEEECCCCCHHHHHHHHHHCCHHH
IAYLFDTATHFSYEQRRLGYEKAMYEKGYTPLVYPFNEKSNMLEITKRILEEHPEVEAIA
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEH
TCEDRVALKVIECLKALGKRVPDDVGVMGFDDIESAETSDPALTTVNVFKEEMGSLAAKR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LFDLLNNEDIRPTQISLFTNIVIRDSVKL
HHHHHCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]