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The map label for this gene is pyrF [H]

Identifier: 238924830

GI number: 238924830

Start: 2349982

End: 2350914

Strand: Reverse

Name: pyrF [H]

Synonym: EUBREC_2481

Alternate gene names: 238924830

Gene position: 2350914-2349982 (Counterclockwise)

Preceding gene: 238924831

Following gene: 238924829

Centisome position: 68.15

GC content: 47.27

Gene sequence:

>933_bases
ATGATCAACAAATTAGTAGACAAAATCAAGAAAACAAACGCACCTATCGTAGTAGGTCTCGACCCGATGCTTTCATATGT
GCCTGAGCATATCACAAAGAAGGCATTTGATGAGCTTGGAGAGACACCGGCCGGTGCAGCGGAGGCTATCTGGCAGTACA
ACAAGGCTATTGTGGATGCCACATATGACCTGATTCCGGCTGTAAAGCCACAGATTGCTATGTATGAGCAGTTTGGAGTG
GAGGGCCTTAAGACATTCCAGAAGACAGTGGATTACTGTCATGAGAAGGATCTCGTGGTTATCGGAGATGTAAAGCGTGG
AGATATCGGCTCAACATCGGCTGCATACGCCACAGGACATCTCGGAAAGGTACAGATCGGCAGCAAGAGCTATTCTACCT
TTGATGAGGATTTTGCCACTGTCAATCCATACCTTGGAACAGACGGTATCAAGCCATTCGTAGATGTATGCAAGGAGGAG
AAGAAGGGTATCTTCATTCTTGTAAAGACATCTAATCCATCAAGTGGAGAGTTCCAGGACCGTATGATTGACGGACGCCC
ATTATATGAGTGGGTAGGTGAGAAGGTTGCAGAGTGGGGAGCTGACTGCATGGGTGATTCATACAGCTATGTAGGTGCGG
TTGTCGGTGCAACATACCCTGAGCAGGGTAAGATTCTTCGTAAGGTAATGCCAAAGAGCTTCATCCTCGTACCGGGCTAC
GGCGCACAGGGAGGAAAGGGCGCAGACCTTGTTCATTTCTTCAATGAGGACGGACTTGGTGCAATTGTCAATTCATCACG
TGGAATCATCTGCGCATACAAGCAGGATAAGTACAAGGATATGGGCATCACAGCAGAGAATTTTGCAGATGCATCACGCA
AGGCTGTTGAGGATATGATTGAGGATATCTCAGGAGCACTTGCAAATCGTTAA

Upstream 100 bases:

>100_bases
GAATTTAGTTTATGCTATAAAATATTTATAACTGTATGCAGATATTTAATAATCACAATATCTGTCTGTATAATAAAATA
CGCATAAAGAGGACGAAAGA

Downstream 100 bases:

>100_bases
TAAGTTATTCAGAAAGCTTAAATATATTAACAAACGAAACCAGGGAGATAAAATGGCAGAGAAATTTGAGGAGATTGCAG
TTGTAGTTGACCAGAGCTCA

Product: orotidine 5-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDATYDLIPAVKPQIAMYEQFGV
EGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGHLGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEE
KKGIFILVKTSNPSSGEFQDRMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGY
GAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMIEDISGALANR

Sequences:

>Translated_310_residues
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDATYDLIPAVKPQIAMYEQFGV
EGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGHLGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEE
KKGIFILVKTSNPSSGEFQDRMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGY
GAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMIEDISGALANR
>Mature_310_residues
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDATYDLIPAVKPQIAMYEQFGV
EGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGHLGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEE
KKGIFILVKTSNPSSGEFQDRMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGY
GAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMIEDISGALANR

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 33757; Mature: 33757

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDA
CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TYDLIPAVKPQIAMYEQFGVEGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGH
HHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCC
LGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEEKKGIFILVKTSNPSSGEFQD
CCEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
RMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGY
HHCCCCHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCC
GAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMI
CCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
EDISGALANR
HHHHHHHCCC
>Mature Secondary Structure
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDA
CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
TYDLIPAVKPQIAMYEQFGVEGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGH
HHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCC
LGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEEKKGIFILVKTSNPSSGEFQD
CCEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
RMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGY
HHCCCCHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCC
GAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMI
CCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
EDISGALANR
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA