| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
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The map label for this gene is polA [H]
Identifier: 238923922
GI number: 238923922
Start: 1443897
End: 1446608
Strand: Direct
Name: polA [H]
Synonym: EUBREC_1560
Alternate gene names: 238923922
Gene position: 1443897-1446608 (Clockwise)
Preceding gene: 238923921
Following gene: 238923923
Centisome position: 41.86
GC content: 44.54
Gene sequence:
>2712_bases ATGAGTGAAAAGCTTGTACTTATAGACGGACACAGTATTTTAAACAGGGCATATCACGGACTTCCTGATCTGACCAATTC AGAGGGGCTTCACACAAATGCAGTCTATGGATTTTTGAATATCATGTTCAAGATTCTTGACGAGGAAAAGCCTGACTATC TGACGGTGGCATTTGATGTGCATGCGCCGACGTTTCGCCACAGGATGTTTGATGCGTACAAGGGCACGAGAAAGCCTATG GACGAGGAGCTCAGGCAGCAGGTGCCTATGATAAAGGAAATGCTTACCGCTATGGGCATTAAAATCGTGGAAAAGGAGGG CTATGAGGCCGACGATATACTTGGAACCTTATCTGTCAGGGCAGAAAAGGCCGGTATGGATGTCGCCATCATTTCCGGAG ACAGAGACCTTTTGCAGCTTGCGACTGACCATGTCATGGTAAGGATTCCAAAGACAAAGAAAACAGGAACCGAGATAGAA AATTACAATACAGCAGATGTTATCGAAAAGTACGGCGTCACTCCAAAGGAGTTTATCGATGTAAAGGCTCTGCAGGGGGA TACGTCTGATAATATTCCCGGGGTACCCGGTATCGGCGAAAAGACAGCAGGTGCACTTATAGCAAAATATCACTGTATAG AGGCAGTACATGAGGACGCTGAGAATGTAAAGCCGCCAAGGGCTTCAAAGAATATAGTGGAGTATTGGGAGCAGGCGCTT ATGAGCAAGGAGCTTGCGACAATCATACTTGATGCGCCGGTTGACTATGAATTTTCTGATGCAAAGCTTAGTGGCGGAGT AGAGTCACTCTACACGGAGGAAGCCTTTTTACTGTGCAAAAGATACGAATTCAAAAACATGCTGTCGCGGTTTAACGTGG AGGCTCCTAAAAACAATGCCGAGGAGCATTTTGTGGTAGTAAGGGACTTGAAGACTGCAGAGAGTGTGTTTGAGAAGGCA AAGGACAGGGAGGTTGCTTTTGCGGTAGTACCAGGAGAGTCTTTGGAAAACAGCGAAAGTGATGGACAGCTAAGTCTGTT TTCGGAGCCGGTTTCTAACGATTATCTTGCTGTTTCGATTTGTTTTTCAGAGGAGGACATTTATTTTATCTGTACAGGTG ATGAGATTTCAAGCAGCTTCCTGGATGAAAAATTAAATACCCTGGAAGTAAAGTCATGGATATCACCGGATTTAAAGACC AATCTGCACAGATTTAAGAGCAAAGAGATAAAGGCAGATGACAGAGGCAGATATTTTGACATGATGGTGGCTGCATACCT TATCAATCCGCTTGTCGGGGAGTATCCCTATGATGCGGTTGCAAAGGACTATCTGGGGCTTATGCTCTCATCTAAAAAGG ATTATCTGGGAAAGCTTGATTTTACTCAGATGATGAAGGAGGATGAGAAAAAGGCAGTGGACTGTGCCTGCTACGAGGTG TATACTGCCTGGAAATCAAAACCGGTTCTTTTGCAGAAGCTAAAAGAAATGAATATGCTCACTCTTTACAGAGATATAGA GCTGCCACTCGTTTTCGTACTGTATGATATGGAAAATGAGGGGATAAGGGCTGATGGAATAAAGCTTAAGGAGTATGGAG ACAAGCTTGCTGTTTCGATAACTGAGCTTGAAAAGAAAATATATGAGGCAGCAGGTGAAGAGTTTAATATAAATTCGCCA AAGCAACTTGGAGTCATTCTCTTTGAAAAGCTTGGACTGCCAAATGAAAAGAAGACAAAGACCGGTTATTCTACTGCGGC AGATGTGCTTGAAAAGCTGGCACCGGAGTATCCGATTGTCGCGGATATATTGGAATACAGACAGCTCACAAAGCTAAAGA GCACATATGCTGACGGACTTTCGGGATATATTGCATCCGATGGCAAAATCCATACTACCTTAAATCAGACAATCACTGCG ACAGGCCGTCTTTCAAGCACAGAGCCTAATCTGCAGAATATCCCGATAAGGATTGAGCTGGGCAAGCTTATCAGAAAGGT ATTTCTGCCTGAGGAGGGAGATTTGTTTGTTGATTCAGACTATTCGCAGATCGAGCTTCGGGTGCTTGCGGCGCTTTCCG GGGATGAAAGGATGATAGAGGCCTTTAAGAATGGTCAGGATATCCACAGAAGTACAGCATCCCTTGTGTTTGACACACCG TTTGATGAGGTCACAGACCTTCAAAGACGAAATGCCAAGGCGGTAAATTTTGGTATCGTATATGGTATCAGCGCGTTTGG TCTGTCTAACGATCTGGGGATTTCAAGGAAAGAGGCACAGGGCTATATAGACAGCTATTTTGTCAAATATCCAAAGATTA AGGAGTTTTTGGATCAGACGGTTTTGGATGCCAAGAAAAATGGCTATACAAAGACCATGTTTGGGCGTATCAGACCGATT CCCGAGCTGAACTCGAGCAATTTCATGCAAAGACAGTTTGGAGAGAGAGTTGCGATGAACTCACCTATTCAGGGTACAGC AGCCGATATCATAAAGATTGCCATGATACGTGTGCATGACAGGCTTCTTGACGAGGGCTTAAAGTCAAGACTTATCCTTC AGGTGCATGATGAGCTTTTAATTGAGACAAAGGAAGCTGAGAAGGATAAAGTGATTAAGCTTCTGGAGAAAGAGATGCGT GGTGCGGTGGACATGAAGGTATCCATGGAGGTGGGCACCGAGTGTGGCTATGACTGGTATGATGCGCATTGA
Upstream 100 bases:
>100_bases GTGGCTTAAGAAATATACAAGAGCTATTTAACGTTACTGCCTGCACTGCAGTGTGACCGGCAGCGATTACAACAATATTA AGTAATAAGGAAAGTATAAA
Downstream 100 bases:
>100_bases TGACAGAAAAGGAAACAGTATGATTTTTATAGGAATAACAGGTGGTGTAGGTGCCGGAAAATCGGCAGTGCTTAGCTATC TTAGGGAACTTGATGGCGTA
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 903; Mature: 902
Protein sequence:
>903_residues MSEKLVLIDGHSILNRAYHGLPDLTNSEGLHTNAVYGFLNIMFKILDEEKPDYLTVAFDVHAPTFRHRMFDAYKGTRKPM DEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVRAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIE NYNTADVIEKYGVTPKEFIDVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQAL MSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNNAEEHFVVVRDLKTAESVFEKA KDREVAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSICFSEEDIYFICTGDEISSSFLDEKLNTLEVKSWISPDLKT NLHRFKSKEIKADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKKAVDCACYEV YTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYEAAGEEFNINSP KQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQTITA TGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTP FDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPI PELNSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMR GAVDMKVSMEVGTECGYDWYDAH
Sequences:
>Translated_903_residues MSEKLVLIDGHSILNRAYHGLPDLTNSEGLHTNAVYGFLNIMFKILDEEKPDYLTVAFDVHAPTFRHRMFDAYKGTRKPM DEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVRAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIE NYNTADVIEKYGVTPKEFIDVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQAL MSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNNAEEHFVVVRDLKTAESVFEKA KDREVAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSICFSEEDIYFICTGDEISSSFLDEKLNTLEVKSWISPDLKT NLHRFKSKEIKADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKKAVDCACYEV YTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYEAAGEEFNINSP KQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQTITA TGRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTP FDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPI PELNSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMR GAVDMKVSMEVGTECGYDWYDAH >Mature_902_residues SEKLVLIDGHSILNRAYHGLPDLTNSEGLHTNAVYGFLNIMFKILDEEKPDYLTVAFDVHAPTFRHRMFDAYKGTRKPMD EELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVRAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIEN YNTADVIEKYGVTPKEFIDVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQALM SKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNNAEEHFVVVRDLKTAESVFEKAK DREVAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSICFSEEDIYFICTGDEISSSFLDEKLNTLEVKSWISPDLKTN LHRFKSKEIKADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKKAVDCACYEVY TAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSITELEKKIYEAAGEEFNINSPK QLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQTITAT GRLSSTEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPF DEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIP ELNSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRG AVDMKVSMEVGTECGYDWYDAH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=443, Percent_Identity=34.0857787810384, Blast_Score=241, Evalue=3e-63, Organism=Homo sapiens, GI139394648, Length=605, Percent_Identity=26.7768595041322, Blast_Score=201, Evalue=4e-51, Organism=Escherichia coli, GI1790294, Length=943, Percent_Identity=39.4485683987275, Blast_Score=563, Evalue=1e-161, Organism=Escherichia coli, GI226510970, Length=268, Percent_Identity=25.3731343283582, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI86563272, Length=389, Percent_Identity=30.3341902313625, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI17933644, Length=424, Percent_Identity=32.311320754717, Blast_Score=197, Evalue=4e-50,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR003583 - InterPro: IPR012337 [H]
Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 101883; Mature: 101751
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLVLIDGHSILNRAYHGLPDLTNSEGLHTNAVYGFLNIMFKILDEEKPDYLTVAFDV CCCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEC HAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVR CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHH AEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFID HHHCCCEEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHE VKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQAL EHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNNA HHHHHHEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC EEHFVVVRDLKTAESVFEKAKDREVAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSI CCCEEEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEE CFSEEDIYFICTGDEISSSFLDEKLNTLEVKSWISPDLKTNLHRFKSKEIKADDRGRYFD EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHH MMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKKAVDCACYEV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH YTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSI HHHHCCCHHHHHHHHHCCHHEEEECCCCCEEEEEEECCCCCCCCCCEEHHHCCCHHEEHH TELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIV HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH ADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQTITATGRLSSTEPNLQNIPIRIEL HHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEEH GKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTP HHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHEEEECC FDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQT HHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH VLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHD HHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHH RLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVDMKVSMEVGTECGYDWY HHHHHHHHHCEEHEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC DAH CCC >Mature Secondary Structure SEKLVLIDGHSILNRAYHGLPDLTNSEGLHTNAVYGFLNIMFKILDEEKPDYLTVAFDV CCCEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEC HAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSVR CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHH AEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFID HHHCCCEEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHE VKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQAL EHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH MSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNNA HHHHHHEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC EEHFVVVRDLKTAESVFEKAKDREVAFAVVPGESLENSESDGQLSLFSEPVSNDYLAVSI CCCEEEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEE CFSEEDIYFICTGDEISSSFLDEKLNTLEVKSWISPDLKTNLHRFKSKEIKADDRGRYFD EECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHH MMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKKAVDCACYEV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH YTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIKLKEYGDKLAVSI HHHHCCCHHHHHHHHHCCHHEEEECCCCCEEEEEEECCCCCCCCCCEEHHHCCCHHEEHH TELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTGYSTAADVLEKLAPEYPIV HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHH ADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQTITATGRLSSTEPNLQNIPIRIEL HHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEEH GKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTP HHHHHHHHCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHEEEECC FDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQT HHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH VLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHD HHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHH RLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVDMKVSMEVGTECGYDWY HHHHHHHHHCEEHEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC DAH CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]