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The map label for this gene is ypdF [C]

Identifier: 238923921

GI number: 238923921

Start: 1442037

End: 1443827

Strand: Direct

Name: ypdF [C]

Synonym: EUBREC_1559

Alternate gene names: 238923921

Gene position: 1442037-1443827 (Clockwise)

Preceding gene: 238923920

Following gene: 238923922

Centisome position: 41.8

GC content: 45.06

Gene sequence:

>1791_bases
ATGATACAGGATAGATTAAAAGCATTGAGAAGCGAGATGGCAAAGAGGGGCATCTCGCTGTATGTGGTACCTACTGCTGA
TTTTCATGAGTCAGAGTATGTAGGAGAGCATTTTAAGGCACGCAAATATATTACAGGCTTCACGGGCTCAGCAGGTACCG
CAGTCATCACTATGGATGAGGCCGGACTATGGACAGACGGCAGGTATTTTGTGCAGGCGGCTGCGCAGCTTAAGGATACC
ACTGTAAAGCTCTTTAAGATTGGCGAGGAGGGCGTACCGACAGTTGATGAGTATATAAAGGATACTCTTTCGGATGGCGG
TGTAATAGGCTTTGACGGCAGAGTGGTAAATGCCGCATGGGGCAAAAGGCTTTCTGAAATTGCAAAAGAAAAGCACGGCA
GCATGTACGTAAATGAGGATCTGATTGACATTATATGGACTGACAGACCACCTATGTCAAAGGCACCTGTCATGATTTTT
GACAATAAATACACCGGTGAGGATATAAGCTCAAAGCTTAAAAGAGTCAGAGAGCAGATGGCACAAAAGGGTGCAACACT
TCATCTGATGTCATCACTTTACGATATCGCCTGGCTTTTAAATGTCAGGGGAGGCGACATAAGCTATGTGCCTGTAGTGC
TTTCATACCTGGCACTGTCACAGGACAGCTGCATATGGTTTTTGCAGGAAGAGGTTGTGACAGAGACTCTTAAGGCATAC
CTCGATAAGAATGGTATACAGACAAGACCTTACGATGATTTTTATGAATATGTGAAGCATATTGATGAAAAAGAGACAGT
GCTTTTAAATACATCGATTGTAAATTACCGCATCTGCGACAGCCTGCCGGATGGTGTTAAGGTGATTGATGCGGAGGATC
CTACAGTTGTCATGAAGGCCGTAAAGAATGAAGTACAGCTTGAAAATCTGCGCAAGGCACATTTGAAGGATGCAGTTGCG
ATGTGCAAGTTCATGTACTGGCTTAAGACAAATATAGGTAAGATACCCATGACAGAGATTTCGGCTTCAGATTATCTTGC
ATCGCTTAGAGCTGAGCAGGAGGGCTTTCTTGATTTGAGCTTTGCCACAATATGCGGATATGCTGATCATGGTGCTATTG
TGCATTACTCTGCAACAGAGGAGTCTGACAGGCAGCTTAAGCCTGAGAGTCTTCTTTTGGTTGATTCAGGAGGACATTAT
CTGGAGGGAACCACAGATATCACGAGGACCTTTGCGTTAGGACCTGTGACTGACGAGATGAAGGATATGTTTACGAGAGT
TTGCCGCTCAAATATGAACCTGGCAAATGCAAGGTTTAAGGAGGGCTGCTCGGGACTAAACTTTGATATTCTGGCAAGAG
AGCCTTTCTGGGAGATTGGCATGGACTACAATCACGGTACCGGACACGGTGTGGGCTATGTGCTCAATGTTCATGAGGGG
CCAAACAGCTTTCACTGGAAGCAGTACCCGGGCAGAACTGCAGAGCGTGTGATAGAAGAGGGCATGGTTACTACAGACGA
GCCGGGCATCTATTTAGAGGGCAAATTCGGTATTCGTACAGAGAATGAGCTGATTTGCCGAAAAGGCGAGAAAAATGAGT
ATGGCCAGTTCATGTATTTTGAGAATCTGACCTATGTACCGATAGATCTCGATGCGATTGATCCAAATCAGATGACAGAC
AGGGAAAAGGGATACCTGAACGCTTACCATGCGAGAGTTTATGAGCTTGTTTCACCATTTTTGAATGATGAGGAGGCTCA
GTGGCTTAAGAAATATACAAGAGCTATTTAA

Upstream 100 bases:

>100_bases
AGCCATTGCTTTTTGAACAAATCCGGCAAACCAATCTCATTAAAGAGAATGTATCCGGAATTAGATACAAAATTTTTTGA
ATTTAAAGAGGCATAATAAA

Downstream 100 bases:

>100_bases
CGTTACTGCCTGCACTGCAGTGTGACCGGCAGCGATTACAACAATATTAAGTAATAAGGAAAGTATAAAATGAGTGAAAA
GCTTGTACTTATAGACGGAC

Product: peptidase, M24 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 596

Protein sequence:

>596_residues
MIQDRLKALRSEMAKRGISLYVVPTADFHESEYVGEHFKARKYITGFTGSAGTAVITMDEAGLWTDGRYFVQAAAQLKDT
TVKLFKIGEEGVPTVDEYIKDTLSDGGVIGFDGRVVNAAWGKRLSEIAKEKHGSMYVNEDLIDIIWTDRPPMSKAPVMIF
DNKYTGEDISSKLKRVREQMAQKGATLHLMSSLYDIAWLLNVRGGDISYVPVVLSYLALSQDSCIWFLQEEVVTETLKAY
LDKNGIQTRPYDDFYEYVKHIDEKETVLLNTSIVNYRICDSLPDGVKVIDAEDPTVVMKAVKNEVQLENLRKAHLKDAVA
MCKFMYWLKTNIGKIPMTEISASDYLASLRAEQEGFLDLSFATICGYADHGAIVHYSATEESDRQLKPESLLLVDSGGHY
LEGTTDITRTFALGPVTDEMKDMFTRVCRSNMNLANARFKEGCSGLNFDILAREPFWEIGMDYNHGTGHGVGYVLNVHEG
PNSFHWKQYPGRTAERVIEEGMVTTDEPGIYLEGKFGIRTENELICRKGEKNEYGQFMYFENLTYVPIDLDAIDPNQMTD
REKGYLNAYHARVYELVSPFLNDEEAQWLKKYTRAI

Sequences:

>Translated_596_residues
MIQDRLKALRSEMAKRGISLYVVPTADFHESEYVGEHFKARKYITGFTGSAGTAVITMDEAGLWTDGRYFVQAAAQLKDT
TVKLFKIGEEGVPTVDEYIKDTLSDGGVIGFDGRVVNAAWGKRLSEIAKEKHGSMYVNEDLIDIIWTDRPPMSKAPVMIF
DNKYTGEDISSKLKRVREQMAQKGATLHLMSSLYDIAWLLNVRGGDISYVPVVLSYLALSQDSCIWFLQEEVVTETLKAY
LDKNGIQTRPYDDFYEYVKHIDEKETVLLNTSIVNYRICDSLPDGVKVIDAEDPTVVMKAVKNEVQLENLRKAHLKDAVA
MCKFMYWLKTNIGKIPMTEISASDYLASLRAEQEGFLDLSFATICGYADHGAIVHYSATEESDRQLKPESLLLVDSGGHY
LEGTTDITRTFALGPVTDEMKDMFTRVCRSNMNLANARFKEGCSGLNFDILAREPFWEIGMDYNHGTGHGVGYVLNVHEG
PNSFHWKQYPGRTAERVIEEGMVTTDEPGIYLEGKFGIRTENELICRKGEKNEYGQFMYFENLTYVPIDLDAIDPNQMTD
REKGYLNAYHARVYELVSPFLNDEEAQWLKKYTRAI
>Mature_596_residues
MIQDRLKALRSEMAKRGISLYVVPTADFHESEYVGEHFKARKYITGFTGSAGTAVITMDEAGLWTDGRYFVQAAAQLKDT
TVKLFKIGEEGVPTVDEYIKDTLSDGGVIGFDGRVVNAAWGKRLSEIAKEKHGSMYVNEDLIDIIWTDRPPMSKAPVMIF
DNKYTGEDISSKLKRVREQMAQKGATLHLMSSLYDIAWLLNVRGGDISYVPVVLSYLALSQDSCIWFLQEEVVTETLKAY
LDKNGIQTRPYDDFYEYVKHIDEKETVLLNTSIVNYRICDSLPDGVKVIDAEDPTVVMKAVKNEVQLENLRKAHLKDAVA
MCKFMYWLKTNIGKIPMTEISASDYLASLRAEQEGFLDLSFATICGYADHGAIVHYSATEESDRQLKPESLLLVDSGGHY
LEGTTDITRTFALGPVTDEMKDMFTRVCRSNMNLANARFKEGCSGLNFDILAREPFWEIGMDYNHGTGHGVGYVLNVHEG
PNSFHWKQYPGRTAERVIEEGMVTTDEPGIYLEGKFGIRTENELICRKGEKNEYGQFMYFENLTYVPIDLDAIDPNQMTD
REKGYLNAYHARVYELVSPFLNDEEAQWLKKYTRAI

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI264681563, Length=618, Percent_Identity=35.2750809061489, Blast_Score=392, Evalue=1e-109,
Organism=Homo sapiens, GI264681565, Length=618, Percent_Identity=33.9805825242718, Blast_Score=363, Evalue=1e-100,
Organism=Homo sapiens, GI93141226, Length=605, Percent_Identity=33.3884297520661, Blast_Score=352, Evalue=4e-97,
Organism=Caenorhabditis elegans, GI17509539, Length=612, Percent_Identity=34.1503267973856, Blast_Score=345, Evalue=3e-95,
Organism=Caenorhabditis elegans, GI25149105, Length=615, Percent_Identity=26.9918699186992, Blast_Score=238, Evalue=7e-63,
Organism=Saccharomyces cerevisiae, GI6322999, Length=655, Percent_Identity=32.9770992366412, Blast_Score=327, Evalue=4e-90,
Organism=Drosophila melanogaster, GI17137632, Length=602, Percent_Identity=33.0564784053156, Blast_Score=342, Evalue=5e-94,
Organism=Drosophila melanogaster, GI161078230, Length=621, Percent_Identity=28.0193236714976, Blast_Score=249, Evalue=4e-66,
Organism=Drosophila melanogaster, GI21357287, Length=621, Percent_Identity=28.0193236714976, Blast_Score=249, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 67522; Mature: 67522

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQDRLKALRSEMAKRGISLYVVPTADFHESEYVGEHFKARKYITGFTGSAGTAVITMDE
CCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCEEEEEECC
AGLWTDGRYFVQAAAQLKDTTVKLFKIGEEGVPTVDEYIKDTLSDGGVIGFDGRVVNAAW
CCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCEEEEHHH
GKRLSEIAKEKHGSMYVNEDLIDIIWTDRPPMSKAPVMIFDNKYTGEDISSKLKRVREQM
HHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
AQKGATLHLMSSLYDIAWLLNVRGGDISYVPVVLSYLALSQDSCIWFLQEEVVTETLKAY
HHCCCHHHHHHHHHHHHHEEEECCCCEEHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHH
LDKNGIQTRPYDDFYEYVKHIDEKETVLLNTSIVNYRICDSLPDGVKVIDAEDPTVVMKA
HCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCHHHHHH
VKNEVQLENLRKAHLKDAVAMCKFMYWLKTNIGKIPMTEISASDYLASLRAEQEGFLDLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHCCCCCEEEE
FATICGYADHGAIVHYSATEESDRQLKPESLLLVDSGGHYLEGTTDITRTFALGPVTDEM
HHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEECCCCHHHHEEECCCCCHHH
KDMFTRVCRSNMNLANARFKEGCSGLNFDILAREPFWEIGMDYNHGTGHGVGYVLNVHEG
HHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCCCCEEEEEEECCC
PNSFHWKQYPGRTAERVIEEGMVTTDEPGIYLEGKFGIRTENELICRKGEKNEYGQFMYF
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEECCCCCCCCCEEEE
ENLTYVPIDLDAIDPNQMTDREKGYLNAYHARVYELVSPFLNDEEAQWLKKYTRAI
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MIQDRLKALRSEMAKRGISLYVVPTADFHESEYVGEHFKARKYITGFTGSAGTAVITMDE
CCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCEEEEEECC
AGLWTDGRYFVQAAAQLKDTTVKLFKIGEEGVPTVDEYIKDTLSDGGVIGFDGRVVNAAW
CCCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCEEEEHHH
GKRLSEIAKEKHGSMYVNEDLIDIIWTDRPPMSKAPVMIFDNKYTGEDISSKLKRVREQM
HHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
AQKGATLHLMSSLYDIAWLLNVRGGDISYVPVVLSYLALSQDSCIWFLQEEVVTETLKAY
HHCCCHHHHHHHHHHHHHEEEECCCCEEHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHH
LDKNGIQTRPYDDFYEYVKHIDEKETVLLNTSIVNYRICDSLPDGVKVIDAEDPTVVMKA
HCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCHHHHHH
VKNEVQLENLRKAHLKDAVAMCKFMYWLKTNIGKIPMTEISASDYLASLRAEQEGFLDLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHCCCCCEEEE
FATICGYADHGAIVHYSATEESDRQLKPESLLLVDSGGHYLEGTTDITRTFALGPVTDEM
HHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEECCCCHHHHEEECCCCCHHH
KDMFTRVCRSNMNLANARFKEGCSGLNFDILAREPFWEIGMDYNHGTGHGVGYVLNVHEG
HHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCCCCCCCEEEEEEECCC
PNSFHWKQYPGRTAERVIEEGMVTTDEPGIYLEGKFGIRTENELICRKGEKNEYGQFMYF
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEECCCCCCCCCEEEE
ENLTYVPIDLDAIDPNQMTDREKGYLNAYHARVYELVSPFLNDEEAQWLKKYTRAI
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]