Click here to switch to the map view.

The map label for this gene is ydeC [H]

Identifier: 238922641

GI number: 238922641

Start: 202301

End: 203179

Strand: Direct

Name: ydeC [H]

Synonym: EUBREC_0216

Alternate gene names: 238922641

Gene position: 202301-203179 (Clockwise)

Preceding gene: 238922638

Following gene: 238922642

Centisome position: 5.86

GC content: 40.05

Gene sequence:

>879_bases
ATGTATTTTGAATTAAAAGAAAACCGGCCACACGGCACACCGGAAAATCCGTTCAGCCAATACCATATCAGTGATGTAAA
ACGTGCATTCCAGATTCCGGTACACTGGCACGATGAGCTGGAAATTATATATGTAAAGCAAGGCAAGCTGCATGTGACCA
TATCAGGTGAAAACTATATAGGAAGCCCAAAGGATGCATTTGTGGTATCTCCGGGCAGTCTGCATTTAATGGGCTCGCCG
ACAGGAGATGCAGATTATTACACGTTTCTGTTTCCTCTTGAATATATATCATTTCAGACGGACGATCTCATGGAAAAATC
AATCCTATCCCCTCTCAAACGAGGCAGACTTATGATTAGTCCTCAGATAAATGATACAGCAGCAGATATATGCGAGCGGC
TGATAGAGATAAATGAACAGATATCAGGGAAAAACGCAGAAAAAACAGATGCTGCAAATATAGAGGCGCAATTTGAGACA
AAAATAACTCTCATCAAATTCATCCGGAAAATGTGGAGAAATGGTCTGATTCTGGAAAATGGCACAAATGGCACCAACAC
AACAGAAAAAGAAATGATAACGTATATCCGGCAAAACTATACAAGGGAAATTTCACTGAAGGAATTTGGTGCACAGTTTC
ATTTGTCAGAAAAATACATATCACGCTACTTTAAAGAGCATTTTCATATTACTCTGTCACAGTATGTCAATCATCTCAGG
CTGGAGCACGCCAGACAGCTATTGGAGGAATCAACAGCTTCCGTTACAGAGGTTGCGATGTGCAGTGGATATCAGAATGT
GAGCTATTTTATACGCAGCTTCAAGAAAATGTATGGGGTATCACCTCTTAAATACAGAAATTTTCAAACTTTACCTTGA

Upstream 100 bases:

>100_bases
CTTATGCATGTAATATGTTAAAATAAAAATAGTTGATATATCATTATTATAGTAAACAAACCGGATGGGGATTAAAAGAG
ACTAAGGAATATGTAGAAAA

Downstream 100 bases:

>100_bases
CAAAGTGACAAAAAGAGCATAAAGTATATTAAAAGATTAATTTAACAGTGTTTCAAAACCGATGAGAAAGAAGAGTAGAC
CTTTCCGGATATCTCAGAGA

Product: 2-isopropylmalate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFET
KITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLR
LEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQTLP

Sequences:

>Translated_292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFET
KITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLR
LEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQTLP
>Mature_292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFET
KITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLR
LEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQTLP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=253, Percent_Identity=26.4822134387352, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790559, Length=146, Percent_Identity=24.6575342465753, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790391, Length=92, Percent_Identity=35.8695652173913, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33916; Mature: 33916

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYI
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEEEECCCCCC
GSPKDAFVVSPGSLHLMGSPTGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMIS
CCCCCEEEECCCCEEEEECCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCEEEC
PQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFETKITLIKFIRKMWRNGLILEN
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEC
GTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLR
CCCCCCCHHHHHHHHHHHHHCCEEHHHHHCCCEEECHHHHHHHHHHHHEEEHHHHHHHHH
LEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQTLP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYI
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEEEECCCCCC
GSPKDAFVVSPGSLHLMGSPTGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMIS
CCCCCEEEECCCCEEEEECCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCCEEEC
PQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFETKITLIKFIRKMWRNGLILEN
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEC
GTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYVNHLR
CCCCCCCHHHHHHHHHHHHHCCEEHHHHHCCCEEECHHHHHHHHHHHHEEEHHHHHHHHH
LEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRNFQTLP
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]