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The map label for this gene is yciR [C]

Identifier: 238921899

GI number: 238921899

Start: 108667

End: 110859

Strand: Reverse

Name: yciR [C]

Synonym: EUBELI_20133

Alternate gene names: 238921899

Gene position: 110859-108667 (Counterclockwise)

Preceding gene: 238921901

Following gene: 238921898

Centisome position: 17.69

GC content: 36.07

Gene sequence:

>2193_bases
ATGGTAGACATGAGCAGGTATAATAAGTTAAGAATCAATCCTGATAGATATAATTACGATCTGGCTACGAATCTTCCATT
AAGAAGAACTTTCTGGAGAATAGCTGATAAAACAGTACTTTTTGATAACAAAACATATTGCATACTGGCGATAGATATAG
AGAATTTTCACCTTATTAATAAGTGGTATGGTCGTGAAACTGGTGATGAGCTTCTTATAGAGATTGGAGAAGCTCTTAAG
AGTATAGATGCCGGGTATGGAACAATTTCCGGATATATGGGTGGAGATAATTTCTGTGTTATATTTGAAGAGAACGATGA
TGTGATTAATCTAATCAGAAAAAGAATATCAGGTATTGTTAACGGATACAGGGGGCATGATATTACAAGGGCATATTATG
GTGCATATAAGACTGCAGATAAGGATATAACTACAGGTGAGATGTGTGACTATGCGTATGGTGCGCTAGAGATAGCAAAA
CAGCGCCCTGATAAGGATATCTTCTGGTATGATGAGAGTATGGCAAGGGAACAGGAAGCAGAAGCAAAGCTTATGCCAGA
GATATGCAGTGCAATGGATAATGGAGAATTTACATTTTATCTTCAACCCAAATGTATATTACAGACAGGTAAGATTATTG
GTTCTGAGGCACTTGTGAGATGGATAAGTCCTGAGAAAGGATTTATTTCACCAGGACAGTTTATACCGCTGCTTGAAAAG
AATGGATTCATAAATAAACTTGATGTGTATATATGGGATAAAGTATGTCAGACTATAAGAAGATGGCTTGATGAGGGAAG
AACAGTACTGCCAATATCAATAAATGTTTCGAGAGCAGATATATACTCTATGGATGTTGTAAGAATACTTAAAGGCATGA
TTGAAAAATATAATATTTCAACAGAGTATATTGAAATAGAGATTACAGAGAGTGCATATGTGGAGAATGGCTCGGTAATT
AAGGATACGGAGAAGGCATTTAAGAATGCGGGCTTTAAGATTCTTATTGATGATTTTGGAAGCGGATATTCATCACTTAA
CATGCTTAAGGATATTGATGCAGATGTTCTGAAACTGGATATGAAATTTCTAGACCTTAATCCGGAAAATAATGATAAAG
GTGTAAGCATTATAACTGCAGTTCTTGATATGGCAAGACAGCTCGATATTCCGGCTATTGCTGAGGGTATTGAGACTGAT
GAACAGCTTAAGCTGCTTGAAATCCTGGGCTGTGAATATGCACAGGGATACTATTATTACAGACCTATGCCTATAAGTGA
TTATGAGAAGCTTGTTGATGATAAGGACAACGTAGCTGATAAGCTTATTATTTTAAAAACAAGAAAGAATGATAAGTCTT
ATCTTAAGGAGATAACTGATTACTTCTGGAAGATTGCAGATGTTGATCTTGATACGGGAGCATATCACTTTATAAGAAGG
ACAGATGAGCCTGATTATGTTATGACACCAAGACCTAAGACTATTGCAGAATATGCAGACAGATATATTAAGTATGGTGT
TATCCACCCGGATGATGTTTCACTTTACAAGGAAGCTATTAATCTTGGCAGAATTAAGAAACAGCTTGATGAGGGGAAAG
AAAGAGGAACATACCAGATAAGATATAATATGGATGGAACATATAAATGGTATGTATTTGAGGTTACTAAGCCAACAAAT
TATTCTGAGGATAACAGGAGAGTGCTTTTCACATGGAAAGAAGCTGATTATCAGGCAGGTGCAAGAGAAGATGCAATGGA
TATTATATATAATACATTTATTAAGATACTCAGGGCTGATTTTCTGCATGACAGATATGAACCTATAAAGTCAACCCAGG
AGGACATAATAAGAGATGCCGGATTATCAGGCAGTATTAAGGAATATATTGACAAATATATTGATATGGGAGTAGTTCAC
CCTGAGGATGCCGGGACATATAGAGATTTTGCCAATCCAGACAGGGTGCTTGAGCATTTCAGAAACAATAAAAAATCATT
GAGATTGATATTCAGACGGCTTCTTGATGGTGAGTATAAGTGGATGGAGTTGGTTGTGTCAAAGAGCAAGGATTACAGTG
ATGAGATACCTGTATTTATATATTATCTCAGGGAGGTAAGATATATATATGAAGATACGATGGTTTCCGAAATAGAGAAA
AAGAAACAGATGATATATTCGCAAGGGAAATAG

Upstream 100 bases:

>100_bases
TATTTAAATTATTGTTTTATCAATGTATTAATGATAAAATGGAAAAGGTATTTTGGGCGACGTGGGCTTATAAGATATTG
AGGGTACAAAGGAGGCAGCT

Downstream 100 bases:

>100_bases
TAAGCAATATTAATGATGCAAAGAAACGGGAGATGGAATTGTGGGTTCAAGCCGCAAAAGAGAAGTAACTATGTTAAACA
ATAGTAACAATTGTTATTAT

Product: phosphoglucosamine mutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 730; Mature: 730

Protein sequence:

>730_residues
MVDMSRYNKLRINPDRYNYDLATNLPLRRTFWRIADKTVLFDNKTYCILAIDIENFHLINKWYGRETGDELLIEIGEALK
SIDAGYGTISGYMGGDNFCVIFEENDDVINLIRKRISGIVNGYRGHDITRAYYGAYKTADKDITTGEMCDYAYGALEIAK
QRPDKDIFWYDESMAREQEAEAKLMPEICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEK
NGFINKLDVYIWDKVCQTIRRWLDEGRTVLPISINVSRADIYSMDVVRILKGMIEKYNISTEYIEIEITESAYVENGSVI
KDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLDMKFLDLNPENNDKGVSIITAVLDMARQLDIPAIAEGIETD
EQLKLLEILGCEYAQGYYYYRPMPISDYEKLVDDKDNVADKLIILKTRKNDKSYLKEITDYFWKIADVDLDTGAYHFIRR
TDEPDYVMTPRPKTIAEYADRYIKYGVIHPDDVSLYKEAINLGRIKKQLDEGKERGTYQIRYNMDGTYKWYVFEVTKPTN
YSEDNRRVLFTWKEADYQAGAREDAMDIIYNTFIKILRADFLHDRYEPIKSTQEDIIRDAGLSGSIKEYIDKYIDMGVVH
PEDAGTYRDFANPDRVLEHFRNNKKSLRLIFRRLLDGEYKWMELVVSKSKDYSDEIPVFIYYLREVRYIYEDTMVSEIEK
KKQMIYSQGK

Sequences:

>Translated_730_residues
MVDMSRYNKLRINPDRYNYDLATNLPLRRTFWRIADKTVLFDNKTYCILAIDIENFHLINKWYGRETGDELLIEIGEALK
SIDAGYGTISGYMGGDNFCVIFEENDDVINLIRKRISGIVNGYRGHDITRAYYGAYKTADKDITTGEMCDYAYGALEIAK
QRPDKDIFWYDESMAREQEAEAKLMPEICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEK
NGFINKLDVYIWDKVCQTIRRWLDEGRTVLPISINVSRADIYSMDVVRILKGMIEKYNISTEYIEIEITESAYVENGSVI
KDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLDMKFLDLNPENNDKGVSIITAVLDMARQLDIPAIAEGIETD
EQLKLLEILGCEYAQGYYYYRPMPISDYEKLVDDKDNVADKLIILKTRKNDKSYLKEITDYFWKIADVDLDTGAYHFIRR
TDEPDYVMTPRPKTIAEYADRYIKYGVIHPDDVSLYKEAINLGRIKKQLDEGKERGTYQIRYNMDGTYKWYVFEVTKPTN
YSEDNRRVLFTWKEADYQAGAREDAMDIIYNTFIKILRADFLHDRYEPIKSTQEDIIRDAGLSGSIKEYIDKYIDMGVVH
PEDAGTYRDFANPDRVLEHFRNNKKSLRLIFRRLLDGEYKWMELVVSKSKDYSDEIPVFIYYLREVRYIYEDTMVSEIEK
KKQMIYSQGK
>Mature_730_residues
MVDMSRYNKLRINPDRYNYDLATNLPLRRTFWRIADKTVLFDNKTYCILAIDIENFHLINKWYGRETGDELLIEIGEALK
SIDAGYGTISGYMGGDNFCVIFEENDDVINLIRKRISGIVNGYRGHDITRAYYGAYKTADKDITTGEMCDYAYGALEIAK
QRPDKDIFWYDESMAREQEAEAKLMPEICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEK
NGFINKLDVYIWDKVCQTIRRWLDEGRTVLPISINVSRADIYSMDVVRILKGMIEKYNISTEYIEIEITESAYVENGSVI
KDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLDMKFLDLNPENNDKGVSIITAVLDMARQLDIPAIAEGIETD
EQLKLLEILGCEYAQGYYYYRPMPISDYEKLVDDKDNVADKLIILKTRKNDKSYLKEITDYFWKIADVDLDTGAYHFIRR
TDEPDYVMTPRPKTIAEYADRYIKYGVIHPDDVSLYKEAINLGRIKKQLDEGKERGTYQIRYNMDGTYKWYVFEVTKPTN
YSEDNRRVLFTWKEADYQAGAREDAMDIIYNTFIKILRADFLHDRYEPIKSTQEDIIRDAGLSGSIKEYIDKYIDMGVVH
PEDAGTYRDFANPDRVLEHFRNNKKSLRLIFRRLLDGEYKWMELVVSKSKDYSDEIPVFIYYLREVRYIYEDTMVSEIEK
KKQMIYSQGK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=27.0588235294118, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=33.1932773109244, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI226510982, Length=381, Percent_Identity=27.5590551181102, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=32.4786324786325, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI87081921, Length=234, Percent_Identity=28.2051282051282, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=34.251968503937, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=267, Percent_Identity=30.7116104868914, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=29.6747967479675, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=33.4645669291339, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=26.8199233716475, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=30.2325581395349, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788849, Length=257, Percent_Identity=26.8482490272374, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=30.4093567251462, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85134; Mature: 85134

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDMSRYNKLRINPDRYNYDLATNLPLRRTFWRIADKTVLFDNKTYCILAIDIENFHLIN
CCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCEEEECCCEEEEEEEEECCEEEEH
KWYGRETGDELLIEIGEALKSIDAGYGTISGYMGGDNFCVIFEENDDVINLIRKRISGIV
HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
NGYRGHDITRAYYGAYKTADKDITTGEMCDYAYGALEIAKQRPDKDIFWYDESMAREQEA
CCCCCCCHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH
EAKLMPEICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEK
HHHHHHHHHHHCCCCCEEEEECCHHEEHHCCHHCCHHHHEECCCCCCCCCCCCEEEEECC
NGFINKLDVYIWDKVCQTIRRWLDEGRTVLPISINVSRADIYSMDVVRILKGMIEKYNIS
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC
TEYIEIEITESAYVENGSVIKDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLD
EEEEEEEEECCEEECCCCEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHEEE
MKFLDLNPENNDKGVSIITAVLDMARQLDIPAIAEGIETDEQLKLLEILGCEYAQGYYYY
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCHHHCCEEEE
RPMPISDYEKLVDDKDNVADKLIILKTRKNDKSYLKEITDYFWKIADVDLDTGAYHFIRR
CCCCCHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
TDEPDYVMTPRPKTIAEYADRYIKYGVIHPDDVSLYKEAINLGRIKKQLDEGKERGTYQI
CCCCCEEECCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
RYNMDGTYKWYVFEVTKPTNYSEDNRRVLFTWKEADYQAGAREDAMDIIYNTFIKILRAD
EEECCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FLHDRYEPIKSTQEDIIRDAGLSGSIKEYIDKYIDMGVVHPEDAGTYRDFANPDRVLEHF
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RNNKKSLRLIFRRLLDGEYKWMELVVSKSKDYSDEIPVFIYYLREVRYIYEDTMVSEIEK
HCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KKQMIYSQGK
HHHHHHCCCC
>Mature Secondary Structure
MVDMSRYNKLRINPDRYNYDLATNLPLRRTFWRIADKTVLFDNKTYCILAIDIENFHLIN
CCCCCCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCEEEECCCEEEEEEEEECCEEEEH
KWYGRETGDELLIEIGEALKSIDAGYGTISGYMGGDNFCVIFEENDDVINLIRKRISGIV
HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
NGYRGHDITRAYYGAYKTADKDITTGEMCDYAYGALEIAKQRPDKDIFWYDESMAREQEA
CCCCCCCHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH
EAKLMPEICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEK
HHHHHHHHHHHCCCCCEEEEECCHHEEHHCCHHCCHHHHEECCCCCCCCCCCCEEEEECC
NGFINKLDVYIWDKVCQTIRRWLDEGRTVLPISINVSRADIYSMDVVRILKGMIEKYNIS
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCC
TEYIEIEITESAYVENGSVIKDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLD
EEEEEEEEECCEEECCCCEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHEEE
MKFLDLNPENNDKGVSIITAVLDMARQLDIPAIAEGIETDEQLKLLEILGCEYAQGYYYY
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCHHHCCEEEE
RPMPISDYEKLVDDKDNVADKLIILKTRKNDKSYLKEITDYFWKIADVDLDTGAYHFIRR
CCCCCHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
TDEPDYVMTPRPKTIAEYADRYIKYGVIHPDDVSLYKEAINLGRIKKQLDEGKERGTYQI
CCCCCEEECCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
RYNMDGTYKWYVFEVTKPTNYSEDNRRVLFTWKEADYQAGAREDAMDIIYNTFIKILRAD
EEECCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
FLHDRYEPIKSTQEDIIRDAGLSGSIKEYIDKYIDMGVVHPEDAGTYRDFANPDRVLEHF
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RNNKKSLRLIFRRLLDGEYKWMELVVSKSKDYSDEIPVFIYYLREVRYIYEDTMVSEIEK
HCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KKQMIYSQGK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]